Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 4e-28
seq11 105 8e-18
seq14 100 3e-16
>seq1
Length=104504130
Score = 140 bits (154), Expect = 4e-28
Identities = 113/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 62744999 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 62745058
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 62745059 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 62745118
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 62745119 CTGTTTCTTATACCATA 62745135
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 53381 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 53440
|| ||| |||| || || ||||| || | || || || || ||||| || || || ||
Sbjct 62750794 GAGCCTTCATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 62750853
Query 53441 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 53500
|| || |||||||||||||| ||||||| |||||| | || || || | || |||
Sbjct 62750854 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 62750913
Query 53501 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 53560
|| || || | | |||||||| || ||||| | ||||| || ||||| || || ||
Sbjct 62750914 AAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 62750973
Query 53561 CTATGTCTCTTATTAGA 53577
| ||| | ||||| ||
Sbjct 62750974 CGATGGCGTTTATTCGA 62750990
Score = 96.9 bits (106), Expect = 4e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| |||| ||| || ||||||||||| | || || ||||| || || || || || |
Sbjct 62766485 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 62766544
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | ||||| | || || ||| | || || | || ||| ||||
Sbjct 62766545 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 62766604
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| |||||||| || |||||
Sbjct 62766605 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 62766650
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||| ||||| |||||||| ||||||||||| || | || || || |||| |
Sbjct 62757236 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 62757295
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 62757296 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 62757355
Query 54145 CGGTTCCAAGTATAT 54159
||||||| ||| ||
Sbjct 62757356 AGGTTCCAGGTAAAT 62757370
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
|| || ||||| || | || ||||| || || |||||||| || |||||||| || |||
Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268
Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544
|| || || ||||| | || ||||| || ||||| || || | || | ||| |||
Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328
Query 54545 ATGTGCTGAGGTCTTTCA 54562
|||||||| |||||||||
Sbjct 62719329 ATGTGCTGTGGTCTTTCA 62719346
>seq11
Length=140388259
Score = 105 bits (116), Expect = 8e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 25928509 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 25928450
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | || ||||||||||| ||||||
Sbjct 25928449 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 25928404
>seq14
Length=103589943
Score = 100 bits (110), Expect = 3e-16
Identities = 178/257 (69%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940
||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| |||||
Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 76501736
Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000
| | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | ||
Sbjct 76501735 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 76501676
Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060
|| | ||| | | ||| ||| ||||| || | || || | |||||| |||||||||
Sbjct 76501675 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 76501616
Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 22117
|| ||||| ||| | |||| | ||| || | |||| | || ||||| | ||||
Sbjct 76501615 TCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 76501556
Query 22118 GCTATTCTACCATAGCA 22134
|| | ||| ||||||||
Sbjct 76501555 GCCACTCTTCCATAGCA 76501539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593636408371920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |