Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq24 325 5e-84
seq14 152 6e-32
>seq24
Length=78163535
Score = 325 bits (360), Expect = 5e-84
Identities = 609/888 (69%), Gaps = 14/888 (2%)
Strand=Plus/Minus
Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417
||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| |
Sbjct 67541742 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 67541683
Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477
|| ||| || ||||| || | || | | | || ||||| | ||| | ||||||||
Sbjct 67541682 ATCCTCACAAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCC 67541623
Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537
|| ||||| |||| || || || || ||||||| ||||| |||||| || | || |
Sbjct 67541622 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 67541564
Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597
| || ||| ||||||| || ||||||| ||||| || | | ||||||| |
Sbjct 67541563 C--GAGTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGA 67541506
Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657
|||||||| || |||| | ||||||||| | || ||||| |||| || || | |||
Sbjct 67541505 CTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTC 67541446
Query 176658 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 176715
| || || ||| || ||| | ||||| || | ||| || || || | | |
Sbjct 67541445 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGTATCGTCACTAGCATCT 67541388
Query 176716 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 176775
|||||| ||||||| | | |||||||||||||||||||||||| |||||
Sbjct 67541387 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAG 67541328
Query 176776 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 176835
| || ||| | | || |||| ||||||||| | ||||| ||||
Sbjct 67541327 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 67541268
Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895
||| ||| | | | ||| ||| | ||||| ||||||||||| ||||||
Sbjct 67541267 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGG 67541208
Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955
| ||||||| | | ||| || | || |||| |||| ||||||| || || || ||||
Sbjct 67541207 CCATCTGCTATTCAGGAATCATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 67541148
Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015
| |||||| ||||||| |||||||| ||||||| || ||| |||| |||||||||||||
Sbjct 67541147 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 67541088
Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCAC--GCAACCCTTCTTAACCTGCAGTGTGCATT 177073
| | ||| ||||||| ||| | ||||| ||| ||| || | ||| ||
Sbjct 67541087 ATCTGGTTGTCCTACTCTCTGCTTTTCAAATGCA---CTTGGAGGCCGACTGTGAACA-- 67541033
Query 177074 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 177133
|||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| ||
Sbjct 67541032 GAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 67540973
Query 177134 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 177193
||||||| ||||||||||| ||||| || |||| ||| | | ||||| ||||||
Sbjct 67540972 TGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 67540913
Query 177194 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241
|||| ||| ||||||||| |||||| |||| | ||| || || ||
Sbjct 67540912 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 67540865
Score = 325 bits (360), Expect = 5e-84
Identities = 609/888 (69%), Gaps = 14/888 (2%)
Strand=Plus/Minus
Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531
||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| |
Sbjct 67541742 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 67541683
Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591
|| ||| || ||||| || | || | | | || ||||| | ||| | ||||||||
Sbjct 67541682 ATCCTCACAAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCC 67541623
Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651
|| ||||| |||| || || || || ||||||| ||||| |||||| || | || |
Sbjct 67541622 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 67541564
Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711
| || ||| ||||||| || ||||||| ||||| || | | ||||||| |
Sbjct 67541563 C--GAGTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGA 67541506
Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771
|||||||| || |||| | ||||||||| | || ||||| |||| || || | |||
Sbjct 67541505 CTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTC 67541446
Query 9772 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 9829
| || || ||| || ||| | ||||| || | ||| || || || | | |
Sbjct 67541445 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGTATCGTCACTAGCATCT 67541388
Query 9830 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 9889
|||||| ||||||| | | |||||||||||||||||||||||| |||||
Sbjct 67541387 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAG 67541328
Query 9890 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 9949
| || ||| | | || |||| ||||||||| | ||||| ||||
Sbjct 67541327 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 67541268
Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009
||| ||| | | | ||| ||| | ||||| ||||||||||| ||||||
Sbjct 67541267 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGG 67541208
Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069
| ||||||| | | ||| || | || |||| |||| ||||||| || || || ||||
Sbjct 67541207 CCATCTGCTATTCAGGAATCATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 67541148
Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129
| |||||| ||||||| |||||||| ||||||| || ||| |||| |||||||||||||
Sbjct 67541147 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 67541088
Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCAC--GCAACCCTTCTTAACCTGCAGTGTGCATT 10187
| | ||| ||||||| ||| | ||||| ||| ||| || | ||| ||
Sbjct 67541087 ATCTGGTTGTCCTACTCTCTGCTTTTCAAATGCA---CTTGGAGGCCGACTGTGAACA-- 67541033
Query 10188 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 10247
|||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| ||
Sbjct 67541032 GAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 67540973
Query 10248 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 10307
||||||| ||||||||||| ||||| || |||| ||| | | ||||| ||||||
Sbjct 67540972 TGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 67540913
Query 10308 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355
|||| ||| ||||||||| |||||| |||| | ||| || || ||
Sbjct 67540912 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 67540865
>seq14
Length=103589943
Score = 152 bits (168), Expect = 6e-32
Identities = 130/160 (81%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||||||| | || || |||||| || ||||| |||||||| |||||||| | |||
Sbjct 5428273 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGCGAGTTCACGTGCTCC 5428332
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | | | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5428333 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 5428389
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCTTAA 138241
||||| || |||| ||| ||||| ||||||||||||| ||
Sbjct 5428390 ATCATTTCCGACAAGGCTTGGCAACCCAGGTAACCCTAAA 5428429
Score = 147 bits (162), Expect = 3e-30
Identities = 127/157 (81%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||| ||||||| | || || |||||| || ||||| |||||||| ||||| || | |||
Sbjct 5433472 CAGTGCCTCAGTCGCAGCCGGAGGGTCTTTAGCTTCTCCCCCAGCGAGTTAACATGCTCC 5433413
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | | | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 5433412 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 5433356
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||| ||||||| ||| ||||| |||||||||||||
Sbjct 5433355 ATCATTTCAGACAAGGCTTGGCAACCCAGGTAACCCT 5433319
Score = 109 bits (120), Expect = 6e-19
Identities = 81/95 (85%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
||||||||||||||| | ||| |||||| ||||||||||| |||||||||||||||||
Sbjct 5426032 TCAGTTTTTCATCTTCATTGTCGTGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 5426091
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| || | || |||||||
Sbjct 5426092 ACTCATGGCTTTGTAGACACCCCTCTCTTGGAGCT 5426126
Score = 82.4 bits (90), Expect = 9e-11
Identities = 54/60 (90%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074
||| |||||| ||||||||||||||||||| ||||||||||| || ||||||||||| ||
Sbjct 5427195 CTTACTGAAGACGCTCTTCACCTGCTCCACCGCCTTGCTCTTGTTTTCGCAGGGCAGAAA 5427254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589992131355160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |