Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq24 325 5e-84 seq14 152 6e-32 >seq24 Length=78163535 Score = 325 bits (360), Expect = 5e-84 Identities = 609/888 (69%), Gaps = 14/888 (2%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| | Sbjct 67541742 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 67541683 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 || ||| || ||||| || | || | | | || ||||| | ||| | |||||||| Sbjct 67541682 ATCCTCACAAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCC 67541623 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537 || ||||| |||| || || || || ||||||| ||||| |||||| || | || | Sbjct 67541622 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 67541564 Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597 | || ||| ||||||| || ||||||| ||||| || | | ||||||| | Sbjct 67541563 C--GAGTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGA 67541506 Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657 |||||||| || |||| | ||||||||| | || ||||| |||| || || | ||| Sbjct 67541505 CTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTC 67541446 Query 176658 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 176715 | || || ||| || ||| | ||||| || | ||| || || || | | | Sbjct 67541445 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGTATCGTCACTAGCATCT 67541388 Query 176716 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 176775 |||||| ||||||| | | |||||||||||||||||||||||| ||||| Sbjct 67541387 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAG 67541328 Query 176776 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 176835 | || ||| | | || |||| ||||||||| | ||||| |||| Sbjct 67541327 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 67541268 Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895 ||| ||| | | | ||| ||| | ||||| ||||||||||| |||||| Sbjct 67541267 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGG 67541208 Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955 | ||||||| | | ||| || | || |||| |||| ||||||| || || || |||| Sbjct 67541207 CCATCTGCTATTCAGGAATCATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 67541148 Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015 | |||||| ||||||| |||||||| ||||||| || ||| |||| ||||||||||||| Sbjct 67541147 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 67541088 Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCAC--GCAACCCTTCTTAACCTGCAGTGTGCATT 177073 | | ||| ||||||| ||| | ||||| ||| ||| || | ||| || Sbjct 67541087 ATCTGGTTGTCCTACTCTCTGCTTTTCAAATGCA---CTTGGAGGCCGACTGTGAACA-- 67541033 Query 177074 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 177133 |||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| || Sbjct 67541032 GAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 67540973 Query 177134 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 177193 ||||||| ||||||||||| ||||| || |||| ||| | | ||||| |||||| Sbjct 67540972 TGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 67540913 Query 177194 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241 |||| ||| ||||||||| |||||| |||| | ||| || || || Sbjct 67540912 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 67540865 Score = 325 bits (360), Expect = 5e-84 Identities = 609/888 (69%), Gaps = 14/888 (2%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| | Sbjct 67541742 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 67541683 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 || ||| || ||||| || | || | | | || ||||| | ||| | |||||||| Sbjct 67541682 ATCCTCACAAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCC 67541623 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651 || ||||| |||| || || || || ||||||| ||||| |||||| || | || | Sbjct 67541622 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 67541564 Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711 | || ||| ||||||| || ||||||| ||||| || | | ||||||| | Sbjct 67541563 C--GAGTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGA 67541506 Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771 |||||||| || |||| | ||||||||| | || ||||| |||| || || | ||| Sbjct 67541505 CTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTC 67541446 Query 9772 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 9829 | || || ||| || ||| | ||||| || | ||| || || || | | | Sbjct 67541445 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGTATCGTCACTAGCATCT 67541388 Query 9830 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 9889 |||||| ||||||| | | |||||||||||||||||||||||| ||||| Sbjct 67541387 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAG 67541328 Query 9890 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 9949 | || ||| | | || |||| ||||||||| | ||||| |||| Sbjct 67541327 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 67541268 Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009 ||| ||| | | | ||| ||| | ||||| ||||||||||| |||||| Sbjct 67541267 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGG 67541208 Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069 | ||||||| | | ||| || | || |||| |||| ||||||| || || || |||| Sbjct 67541207 CCATCTGCTATTCAGGAATCATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 67541148 Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129 | |||||| ||||||| |||||||| ||||||| || ||| |||| ||||||||||||| Sbjct 67541147 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 67541088 Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCAC--GCAACCCTTCTTAACCTGCAGTGTGCATT 10187 | | ||| ||||||| ||| | ||||| ||| ||| || | ||| || Sbjct 67541087 ATCTGGTTGTCCTACTCTCTGCTTTTCAAATGCA---CTTGGAGGCCGACTGTGAACA-- 67541033 Query 10188 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 10247 |||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| || Sbjct 67541032 GAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 67540973 Query 10248 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 10307 ||||||| ||||||||||| ||||| || |||| ||| | | ||||| |||||| Sbjct 67540972 TGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 67540913 Query 10308 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355 |||| ||| ||||||||| |||||| |||| | ||| || || || Sbjct 67540912 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 67540865 >seq14 Length=103589943 Score = 152 bits (168), Expect = 6e-32 Identities = 130/160 (81%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||||||| | || || |||||| || ||||| |||||||| |||||||| | ||| Sbjct 5428273 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGCGAGTTCACGTGCTCC 5428332 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | | | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 5428333 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 5428389 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCTTAA 138241 ||||| || |||| ||| ||||| ||||||||||||| || Sbjct 5428390 ATCATTTCCGACAAGGCTTGGCAACCCAGGTAACCCTAAA 5428429 Score = 147 bits (162), Expect = 3e-30 Identities = 127/157 (81%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||| ||||||| | || || |||||| || ||||| |||||||| ||||| || | ||| Sbjct 5433472 CAGTGCCTCAGTCGCAGCCGGAGGGTCTTTAGCTTCTCCCCCAGCGAGTTAACATGCTCC 5433413 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | | | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 5433412 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 5433356 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||| ||||||| ||| ||||| ||||||||||||| Sbjct 5433355 ATCATTTCAGACAAGGCTTGGCAACCCAGGTAACCCT 5433319 Score = 109 bits (120), Expect = 6e-19 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 ||||||||||||||| | ||| |||||| ||||||||||| ||||||||||||||||| Sbjct 5426032 TCAGTTTTTCATCTTCATTGTCGTGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 5426091 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| || | || ||||||| Sbjct 5426092 ACTCATGGCTTTGTAGACACCCCTCTCTTGGAGCT 5426126 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 138015 CTTGCTGAAGGCGCTCTTCACCTGCTCCACGGCCTTGCTCTTATTCTCGCAGGGCAGGAA 138074 ||| |||||| ||||||||||||||||||| ||||||||||| || ||||||||||| || Sbjct 5427195 CTTACTGAAGACGCTCTTCACCTGCTCCACCGCCTTGCTCTTGTTTTCGCAGGGCAGAAA 5427254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589992131355160