Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq24 286 4e-72
seq28 113 5e-20
seq4101 89.7 6e-13
>seq24
Length=78163535
Score = 286 bits (316), Expect = 4e-72
Identities = 266/338 (79%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| |||||||| ||||| | | | | ||| | ||||| ||||||||||||||
Sbjct 63189429 AGCAGGGTTTCGATGTCAGGCTCGATGTCGATCGTCAGAAAGCGGCGGCTGTACCTGCGC 63189488
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| ||||| | ||||||| |||||||||||||||||||| ||||||||||||
Sbjct 63189489 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 63189548
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||||| |||| || |||||| ||| ||| | | |||||| ||
Sbjct 63189549 CACACCGGGGACCAGGTGATGAACTTAGGGTCGTTCATGAGAGCAGTGGCGTCGTCACTG 63189608
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||| || || || |||||||||||||||||||| ||| | | || || |||
Sbjct 63189609 GGCGTAGGCAGAGCTTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 63189668
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| || || |||||||| ||| || || ||||| | ||||
Sbjct 63189669 TCGCACTTCTCGAAGAGCATGAAATTGGGCTCGAACCCGCCGCCTGGTCGGACATACTTC 63189728
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || |||||| | |||| ||||||||||||
Sbjct 63189729 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 63189766
Score = 168 bits (186), Expect = 8e-37
Identities = 162/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| ||||
Sbjct 63190027 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGTCCGAGGC 63190086
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || ||||
Sbjct 63190087 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 63190146
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||| ||||||| ||| |||||| | | || | | | | || || || ||||
Sbjct 63190147 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 63190206
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| ||||| || ||||||||||||||
Sbjct 63190207 CCAGAGGGCGCGCGGAGAAGGCGTACAC 63190234
>seq28
Length=82073021
Score = 113 bits (124), Expect = 5e-20
Identities = 190/267 (71%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| |||
Sbjct 55865563 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 55865621
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || |||||||||| || ||| | |||||||
Sbjct 55865622 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 55865681
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| || | | |||| |||||
Sbjct 55865682 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAC 55865740
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646
|||||| |||| |||| ||| || || || || |||| ||| ||||| |||
Sbjct 55865741 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 55865799
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
|||||||||||||||||||||||
Sbjct 55865800 CAAGCTGGACGAGCGCTGCCGGCGCCG 55865826
>seq4101
Length=2848
Score = 89.7 bits (98), Expect = 6e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111
|||| ||| ||||||| | || ||||| | | |||||||| | ||||| |||||||||
Sbjct 965 GGGGAAGCGGGGCCTCTGTATCAGGCTCGATGTCCAGGGTCAGAAAGCGGCGGCTGTACC 1024
Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCG 83170
|||| | |||| | ||| | ||||||| || |||| | |||| || ||| | |||
Sbjct 1025 TGCGGAAGGGCCCACTGTCCGGGCCCACCAGGAGCTTCCCGGAAGCTCTGGGCGAAGTCC 1084
Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCG 83230
||||| ||| ||| ||| || |||| | ||| || || |||| | | | ||
Sbjct 1085 CTGCGGGCCACGGGAAACCGGGGGATGAACCTGGGATCCTTCGCGAGGGCCATGGCGGCG 1144
Query 83231 TCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC 83281
|| || ||| |||||||||| | ||| || |||||| | || |||
Sbjct 1145 TCACTGGGCATGCGCAGGGCCTCGCCAAGG-CCGCAAAGAGCCGGTGCGCC 1194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608709445269160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |