Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq24 286 4e-72 seq28 113 5e-20 seq4101 89.7 6e-13 >seq24 Length=78163535 Score = 286 bits (316), Expect = 4e-72 Identities = 266/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 63189429 AGCAGGGTTTCGATGTCAGGCTCGATGTCGATCGTCAGAAAGCGGCGGCTGTACCTGCGC 63189488 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| |||||||||||||||||||| |||||||||||| Sbjct 63189489 ACGGGCACACCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTGCGG 63189548 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 63189549 CACACCGGGGACCAGGTGATGAACTTAGGGTCGTTCATGAGAGCAGTGGCGTCGTCACTG 63189608 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| || || || |||||||||||||||||||| ||| | | || || ||| Sbjct 63189609 GGCGTAGGCAGAGCTTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 63189668 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| || || |||||||| ||| || || ||||| | |||| Sbjct 63189669 TCGCACTTCTCGAAGAGCATGAAATTGGGCTCGAACCCGCCGCCTGGTCGGACATACTTC 63189728 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 63189729 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 63189766 Score = 168 bits (186), Expect = 8e-37 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 63190027 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGTCCGAGGC 63190086 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 63190087 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 63190146 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 63190147 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 63190206 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||||||||| Sbjct 63190207 CCAGAGGGCGCGCGGAGAAGGCGTACAC 63190234 >seq28 Length=82073021 Score = 113 bits (124), Expect = 5e-20 Identities = 190/267 (71%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 55865563 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 55865621 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | ||||||| Sbjct 55865622 TGGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 55865681 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| || | | |||| ||||| Sbjct 55865682 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGTATCAAGCTCATCCGCCACTAC 55865740 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAA-AGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 55865741 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 55865799 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||||||||||| Sbjct 55865800 CAAGCTGGACGAGCGCTGCCGGCGCCG 55865826 >seq4101 Length=2848 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 83052 GGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACC 83111 |||| ||| ||||||| | || ||||| | | |||||||| | ||||| ||||||||| Sbjct 965 GGGGAAGCGGGGCCTCTGTATCAGGCTCGATGTCCAGGGTCAGAAAGCGGCGGCTGTACC 1024 Query 83112 TGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTC-GAAGTTCCAGGCCACGTCG 83170 |||| | |||| | ||| | ||||||| || |||| | |||| || ||| | ||| Sbjct 1025 TGCGGAAGGGCCCACTGTCCGGGCCCACCAGGAGCTTCCCGGAAGCTCTGGGCGAAGTCC 1084 Query 83171 TTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCG 83230 ||||| ||| ||| ||| || |||| | ||| || || |||| | | | || Sbjct 1085 CTGCGGGCCACGGGAAACCGGGGGATGAACCTGGGATCCTTCGCGAGGGCCATGGCGGCG 1144 Query 83231 TCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCC 83281 || || ||| |||||||||| | ||| || |||||| | || ||| Sbjct 1145 TCACTGGGCATGCGCAGGGCCTCGCCAAGG-CCGCAAAGAGCCGGTGCGCC 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608709445269160