Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq23 122 7e-23 seq13 122 7e-23 seq33 89.7 4e-13 seq24 84.2 2e-11 >seq23 Length=109465363 Score = 122 bits (134), Expect = 7e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || ||||| || || ||||| || || | || || | | || Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| ||| | ||||||||| || Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| || |||| ||||||| |||| || |||||| Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | || || || || ||||||||||||| Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 83252353 >seq13 Length=89791019 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | |||||||| |||| |||||||| || || || || ||||| | | Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | |||||||||||||||||||| | || || | ||||||||| || Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||| || ||| || | | | || |||| |||||| Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || ||||| || ||||| Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq33 Length=121428352 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 20959 GCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGG 21018 ||||| | |||| |||| || |||| || || ||||| | | | || || | | Sbjct 51188284 GCCTGGG-ACCAAGTGCACGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGC 51188342 Query 21019 CGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCT 21078 | || |||| ||| ||||| ||| |||| ||||||||||||| || ||| | |||||||| Sbjct 51188343 CATCTTCCAACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGT-CAGGGGGATGCCTTCCT 51188401 Query 21079 TGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAA 21138 | | | ||| ||||| | || | |||| | |||| |||| ||||| Sbjct 51188402 TACCCTGTACCTTGGCCTTCACATTCTTGATGATGTCACTGCACTCCACCTCCAGGGTAA 51188461 Query 21139 TGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 || |||||| ||| | ||||| ||||| ||||||||||||| Sbjct 51188462 TGATCTTGCTGGTCA--GTTTTCACAAAGATTTGCATTTTGA 51188501 >seq24 Length=78163535 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | | Sbjct 22107621 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 22107680 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | || ||||| || ||||| ||| | || ||||| |||||||| || Sbjct 22107681 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 22107740 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | ||||| ||| || Sbjct 22107741 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 22107800 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTT 21177 || | || |||||||| || || | || || || || |||||||||| Sbjct 22107801 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422200125805964