Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13 145 8e-30 seq23 123 3e-23 seq24 114 1e-20 seq8 109 6e-19 seq4 104 2e-17 seq5 91.5 2e-13 >seq13 Length=89791019 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| | || ||||| ||| Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| ||||||||||| | |||||| Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| |||||||||||||||||| || | ||||| || |||||||| Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| | ||| | || || | |||||| Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGGC 87684773 >seq23 Length=109465363 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| |||||||| | || || || || Sbjct 83252355 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCC 83252414 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 83252415 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 83252473 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || |||||||||||||| || | |||| || || || Sbjct 83252474 CCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTA 83252533 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 83252534 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTGTGAGGGGTGGC 83252585 >seq24 Length=78163535 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 40673 GTGAAACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCG 40732 ||| ||| | ||| |||||||||| ||||| || || || ||||| || |||||||| Sbjct 22107863 GTGGAAC-CGCCGCCAAATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTC 22107805 Query 40733 TCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGG 40792 |||| |||||| || | || | | ||| | |||| || || | || || || | Sbjct 22107804 TCGAGGTCGAACCCTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAG 22107745 Query 40793 GCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCA 40852 | || || | ||||||||| |||| |||| || ||||| || ||||| || | | | Sbjct 22107744 GAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTA 22107685 Query 40853 CCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | | ||||||||||| || |||||| |||| || |||||||||||| Sbjct 22107684 CTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 22107635 >seq8 Length=55920303 Score = 109 bits (120), Expect = 6e-19 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || | || || || || | |||||| ||||| ||| | || ||||| | Sbjct 51506980 AAAGATGCAGATCTCTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCC 51506921 Query 40746 CACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | || || | |||| | ||||| | ||||| ||||||||||| | | Sbjct 51506920 CAGTGACACCACTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTG 51506862 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGA 40862 |||| | ||| || || | || ||||| ||||||||| | | |||| || ||| || Sbjct 51506861 ACCAACCACGTCTAATTTTCGTGGGCACACAGCTGGAGAAGGGCTGCGCTCCGTCA--GA 51506804 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||||| ||| |||| |||| || ||| | || || | |||||| Sbjct 51506803 CTACAATATCCAGAAAGAGTCCACCCTGCGCCTGGTGCTTCGTCTGTGAGGCGGC 51506749 >seq4 Length=81198604 Score = 104 bits (114), Expect = 2e-17 Identities = 158/223 (71%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || ||||||||| | || || || ||| Sbjct 5807350 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5807409 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | || || ||||| || || | ||||||||| | || || |||| Sbjct 5807410 GACACCATCGAGAATGC-CAAGGCCAAGATCC------AAGAGGGCACCTCCCCGAACCA 5807462 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | || |||||| |||||||| Sbjct 5807463 GCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGTGCACACCCTGTCTGACTACAA 5807522 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||||| ||| |||| ||||| | || || |||||||| Sbjct 5807523 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGTGCTTGAGG 5807565 >seq5 Length=178027732 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | | |||| || || ||||||||||| || | ||||||||| ||| Sbjct 29064781 GACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGAC 29064722 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||| ||| |||| ||||| | || ||||||||||||| || Sbjct 29064721 TACAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 29064669 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||| ||| | |||||||| | ||||||| || ||||| |||||||| Sbjct 139077021 GATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAA 139076962 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| | || ||||| || || | Sbjct 139076961 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTT 139076902 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 139076901 CGTCTGAGGGGTGGC 139076887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515145272485040