Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq13 149 5e-31 seq23 98.7 9e-16 seq24 87.8 2e-12 >seq13 Length=89791019 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || || ||||| || || |||||| |||||| Sbjct 87684755 CACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTC 87684696 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||| || ||| |||| ||||||||||| || || || ||||||||||||||| Sbjct 87684695 CAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTG 87684636 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | || | |||||| || ||||||||| | ||| | || || Sbjct 87684635 GATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTT 87684576 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || ||||| |||||||| Sbjct 87684575 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||||||||||| | ||||| ||| || Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || ||||||| | |||||| || || || ||||| ||||| || Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | || | || ||| Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 83252387 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 83252386 CCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358 >seq24 Length=78163535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 22107679 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| | ||| || || || || ||||| |||| || | ||||| || ||||| Sbjct 22107680 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 22107739 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | ||||| Sbjct 22107740 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 22107799 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || || ||||| || || || ||||| ||||| Sbjct 22107800 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433769706991468