Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq13 131 2e-25
seq20 102 9e-17
seq5 102 9e-17
seq23 96.9 4e-15
seq30 95.1 1e-14
seq34 84.2 3e-11
>seq13
Length=89791019
Score = 131 bits (144), Expect = 2e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| |||| | ||| | |||||| |||| ||| ||| || || |||||||| || | |
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| || | || || ||||| || || ||||| || || ||||||||||| | ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| || ||||||||| |||||| ||||| || | | ||||| || | || ||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| | |||||||| |||||||| || ||||| |||||||| |||||
Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq20
Length=149338601
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 38367909 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 38367968
Query 60126 TACTACCGAGGATTGA 60141
||||| |||||| |||
Sbjct 38367969 TACTAACGAGGAATGA 38367984
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 9953365 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9953424
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 9953425 ATACTAACGAGGA 9953437
>seq5
Length=178027732
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 131939384 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 131939443
Query 60126 TACTACCGAGGATTGA 60141
||||| |||||| |||
Sbjct 131939444 TACTAACGAGGAATGA 131939459
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 29083930 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29083989
Query 60126 TACTACCGAGGAT 60138
||||| | |||||
Sbjct 29083990 TACTAACCAGGAT 29084002
>seq23
Length=109465363
Score = 96.9 bits (106), Expect = 4e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
||| || || || |||||||||| ||||| | | || || ||||| || || || ||
Sbjct 83252549 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAA 83252490
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111
||||| | ||||||||| | || | || ||||| ||| ||| || || | |
Sbjct 83252489 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 83252430
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||| || | ||||| || | |||||||| ||||| || || ||||| ||
Sbjct 83252429 CTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCAC 83252370
Query 43172 AAAGATTTGCATTTTTAC 43189
|||||||||||||| ||
Sbjct 83252369 GAAGATTTGCATTTTGAC 83252352
>seq30
Length=117797301
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 30046571 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30046630
Query 60126 TACTACCGAGGA 60137
||||| |||||
Sbjct 30046631 TACTAAAGAGGA 30046642
>seq34
Length=181543317
Score = 84.2 bits (92), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCG 60133
||||||||||| ||| |||||||| |||||||||| | |||||||||||||||||| ||
Sbjct 30153920 CAGGGAATCGAGCCCCGGTCTCCCACGTGACAGGCTGGGATACTCACCACTATACTAACG 30153861
Query 60134 AGGA 60137
||||
Sbjct 30153860 AGGA 30153857
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571735551322120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |