Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq12 2453 0.0 seq7 89.7 4e-13 >seq12 Length=127780087 Score = 2453 bits (2720), Expect = 0.0 Identities = 1568/1711 (92%), Gaps = 33/1711 (2%) Strand=Plus/Plus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||||||||| |||||||||| |||||||||||||| ||||||||||||| ||||| Sbjct 67981418 GTCCTAACTCCAGGCCCAGCATGATCAGCTGGTTTGCAGCGTCAGGTTACAGATCTCCAT 67981477 Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 ||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||| Sbjct 67981478 CCACAAGGGTCCCAGGCAGGACTTGACTGAGGACATTTGTCTAGAGAAGAAATCTATCTT 67981537 Query 107191 TACCATCACTCTGGAGTTG-AACTTGATGTTCT-------------GGATTAGTTTGTAA 107236 | ||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 67981538 TGCCATCACTCTGGAGTTGGAACTTGATGTTCCTTGAGGATGTTCCGGATTAGTTTGTAA 67981597 Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCT 107296 ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| Sbjct 67981598 CTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCGCCTTCCCTGTGCCCAAACTCC 67981657 Query 107297 CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCA 107356 | |||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 67981658 ACCGATCTCTCATCCCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGTCATCA 67981717 Query 107357 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAG 107416 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||| Sbjct 67981718 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTGTCAG 67981777 Query 107417 GTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTG 107476 ||| |||||||||||||||||| |||||||||||||||||| |||||| ||||||| || Sbjct 67981778 GTTGAAATGTGATGTAGATTCCCTGGATCTGGAGTCCAGGGGCTTCCAAAGTCAGCGTTG 67981837 Query 107477 TAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGG 107536 ||| ||| | || ||||| | |||||||||||||||||||||||| |||||||||||||| Sbjct 67981838 TAGAGACGTCTTATACAAGAACCTGAAGCTGCCAGCAAAGAGATCGATCAACTGTTCTGG 67981897 Query 107537 GATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAA 107596 |||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||| || Sbjct 67981898 GATCACACGAGGGGACCAGGAAGCAGTGAGCCAGGCTCTCCTGGACAACCTGGAAGTCAA 67981957 Query 107597 GAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG 107656 ||| ||||||| |||| |||||| |||| ||||||||||||| ||||||||||||||||| Sbjct 67981958 GAAGAAGCGGTTGCCTTTCACTGACACCGATTACCTCAACATGACCAGAGACTGTGAGCG 67982017 Query 107657 CTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCC 107716 || ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||| Sbjct 67982018 GTTTAAGGCCCGAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGACTTCCC 67982077 Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67982078 CATTGCATACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 67982137 Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836 |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 67982138 TGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTT 67982197 Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67982198 CAAAGAGGCAGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 67982257 Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 67982258 GGTCCCAGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGA 67982317 Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 67982318 CTTGCTCCAGAGCTCGGTGCCATGGAAATACTTACTGAATACATGCGGGACAGACTTCCC 67982377 Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076 |||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 67982378 CATAAAGACCAACGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTAT 67982437 Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC 108136 |||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||| Sbjct 67982438 GGAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACGAGGTGAC 67982497 Query 108137 AGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTT 108196 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 67982498 AGACAGACTGTACCTAACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTT 67982557 Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256 ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| Sbjct 67982558 CACGGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAGCATGTCTTAGAGAACCC 67982617 Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316 ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||| Sbjct 67982618 CAAATCCCAAAGACTGATTGAATGGGCCAAAGACACCTATAGCCCTGATGAACACCTCTG 67982677 Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 67982678 GGCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCA 67982737 Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 67982738 CATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCACGAGGGAGATGT 67982797 Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496 |||||||||||| ||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct 67982798 CAGCATGGGGGCACCTTATGCACCTTGCTCTGGAATCCATCAGCGGGCCATTTGCATTTA 67982857 Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 67982858 TGGGGCCGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 67982917 Query 108557 CCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCAT 108616 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 67982918 CCCAAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTATTTACGTCATAAGGCCAT 67982977 Query 108617 CTATGGGACTGAACTTTGAGCTGCACTGT------------------GGGCCAGGGAC-T 108657 ||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 67982978 CTATGGGACTGAACTTTGAGCTGTACTGTGGGCGGATTGCTACCTGAGGGCCAGGGACAT 67983037 Query 108658 GTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 108717 ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 67983038 GTGCCAACATGCCTAGGGCATGCTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 67983097 Query 108718 CCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 | |||||||||||||||||||||| ||||| Sbjct 67983098 TCGTGGCATCCCCCAGGGTCAGAGGCCTGCT 67983128 >seq7 Length=66841537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 197/289 (68%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGA-GACTTTCAAAGAGGC 107845 ||||||||| | ||||| || |||||||| | ||| | ||| || ||| ||||| || Sbjct 57553323 CCTCAGAACGTCTACTGCGTTCACGTGGACGAGAAAGCGACAGCTGAATTT-AAAGATGC 57553265 Query 107846 GGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGG 107904 ||| || | |||| | ||||||||| |||| |||| |||| ||| ||| | | Sbjct 57553264 GGTGCAG-CGATTACTGAGCTGCTTCCCAAATGCCTTCCTGGCTTCCAAGATGGAGTCTG 57553206 Query 107905 TGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCC 107964 |||| || || ||||| | || |||||||||||||| || ||||| ||| Sbjct 57553205 TGGTCTACGCAGGAATTTCCAGGCTCCAGGCTGACCTGAACTGCCTGCAAGAC---CTCA 57553149 Query 107965 AGAGCTC---AGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAA 108021 | ||| ||||||||||| ||| | || || |||||| ||| |||||| | | Sbjct 57553148 TAAACTCGGAGGTGCCATGGAAATACACCATCAACACCTGCGGGCAAGATTTCCCCCTGA 57553089 Query 108022 AGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAA 108070 | |||||| ||||| ||| | ||||| || ||||| || || Sbjct 57553088 AAACCAATCGGGAGATCATCCAGTATCTCAAAGGATTTAAGGGGAAAAA 57553040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348220077086046