Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq503 93.3 3e-14 >seq503 Length=25129 Score = 93.3 bits (102), Expect = 3e-14 Identities = 225/333 (68%), Gaps = 17/333 (5%) Strand=Plus/Minus Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAA 20282 ||| ||||| || ||||| ||||||||||| ||||||||||| |||||||||| ||| | Sbjct 16795 TTTAGGTCCAGTATATGGGTTTCAATGGAGGCATTTTGGAGCACAATATGTTGATATGCA 16736 Query 20283 CACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATG--TTATTAATTTAATTAAA 20340 || | | ||| || || || || | | || ||| | || ||||| | || Sbjct 16735 CAAAGACTATA--GGTAAATCTTTATATTATT---AATATGCATGGTTGATTTAGTAAAT 16681 Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAA-AGATGTGCCTTT 20399 | || || | ||| || | || | | | || ||| |||| || || Sbjct 16680 ATCTACT-AATCAACA-AATATATACATAAA-----TATAAT--TAATAGATTTGGCTAA 16630 Query 20400 AATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTC 20459 |||||| | || ||||| ||| || | | ||| ||||| |||| | || | ||||| Sbjct 16629 AATGGCACTTCCACCATGCCATTTGTTGTTCCAGTTTTATGTTGGTGATGGGAAGTTGTC 16570 Query 20460 GTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAG 20519 ||| ||| | ||| |||| |||||||||||| || || || || ||||||||| Sbjct 16569 ATGTATGATGCACCAAAGATCATGTGATATGGGACTAGGAGTACCATTTAATATTGCATC 16510 Query 20520 TTATGCGCTGCTTACGTATATGATTGCACATGT 20552 || | |||| |||||||||||||| ||||| Sbjct 16509 ATACTCATTGCTGACGTATATGATTGCTCATGT 16477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399128154033655