Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq13 125 6e-24 seq23 104 2e-17 >seq13 Length=89791019 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| ||| ||||| || |||||||| ||| ||| | || ||| Sbjct 87684754 ACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCC 87684695 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || ||||| |||| ||||| ||||| || || | ||||||||||| Sbjct 87684694 AGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGG 87684635 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 87684634 ATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTG 87684575 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||||||| |||||||||||||| ||||| Sbjct 87684574 CCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| |||| | | |||| |||||| || ||| ||||| |||||||| || Sbjct 83252585 GCCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGA 83252526 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || ||||| ||||| ||||| || || | || ||| ||||| || || Sbjct 83252525 AAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGG 83252466 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| ||| || || ||| || | | | | |||| | |||||| Sbjct 83252465 AATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCAC 83252406 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || || |||||||| ||||| |||||||| ||||||||||| ||| Sbjct 83252405 CTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 83252354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395019928856059