Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_003094.2
Length=130759
Score E
Sequences producing significant alignments: (Bits) Value
seq13 89.7 4e-13
seq24 82.4 6e-11
>seq13
Length=89791019
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
|||||||| ||||| || ||| | || ||||| || || ||| | || ||||| | ||
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|||| | || | ||| || | ||||| | || || ||| | || |||||||
Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011
|| ||| | || | ||||||||||| ||||| ||| | ||| || || ||||
Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725
Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058
|| ||||||||| |||| || || || ||| | || |||| || ||
Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGG 87684772
>seq24
Length=78163535
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891
||||| || || || || ||| | || || || || || || |||| |||||| |
Sbjct 22107847 ATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 22107788
Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951
|| | |||||| ||| |||| || || | || ||||| | || |||||||
Sbjct 22107787 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 22107728
Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATG-ACTATGAACGATTACAG 25010
||| | | || | ||| ||||| ||||||||||| | ||| ||| || || ||||
Sbjct 22107727 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTACAA 22107669
Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059
||| || || ||| |||| |||||| ||||||| || | || || |||
Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGT 22107620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418245479139680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |