Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq24 113 4e-20
seq1 111 1e-19
seq13 95.1 1e-14
seq5 91.5 1e-13
seq31 89.7 5e-13
>seq24
Length=78163535
Score = 113 bits (124), Expect = 4e-20
Identities = 158/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| ||||| ||||| || || || ||||| |||| || ||||| ||
Sbjct 22107847 ATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 22107788
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || || | || ||| |||||||| | || || ||||||
Sbjct 22107787 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 22107728
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| | || || || |||||||| || ||||||| | ||| ||| || || || ||
Sbjct 22107727 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTACAA 22107669
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||| || || ||||||||||| || | |||||
Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 22107630
>seq1
Length=104504130
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 62754001 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 62754060
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||
Sbjct 62754061 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTA 62754120
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 62754121 CCTGTCTCTGTCTGAGACTCAATGATGGC 62754149
>seq13
Length=89791019
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || |||||| | || || || ||
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | |||||| | ||| |||||||| ||| | || || ||||||
Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| || ||||| ||||||||| |||| || ||| || || || ||
Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || || || || |||| || | ||| | |||||
Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGG 87684772
>seq5
Length=178027732
Score = 91.5 bits (100), Expect = 1e-13
Identities = 154/222 (69%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253
|||| |||||||| | ||| ||||| || || || ||||| |||| || | || || |
Sbjct 42512523 TGCAGATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 42512464
Query 31254 ACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGC 31313
| || | |||| || || | || ||| |||||||| | || || |||||||
Sbjct 42512463 ATAGCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 42512404
Query 31314 AGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-----ACTATGAGCGATTA 31368
| | || || || |||||||| || ||||||| | ||| ||| || || ||
Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TAGATGGATATACTTTGTCTGACTA 42512345
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || || ||||||||||| || | |||||
Sbjct 42512344 CAACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 42512303
>seq31
Length=75455120
Score = 89.7 bits (98), Expect = 5e-13
Identities = 155/222 (70%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| |||||| | ||||| ||||||| || || ||||| | || || || ||
Sbjct 60055371 AAGATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCC 60055312
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| || | | |||| || || | || ||| |||||||| || || || |||
Sbjct 60055311 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGAC 60055252
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || |||||||| || ||||||| | ||| ||| ||| | ||
Sbjct 60055251 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TAGATGTACTTTGACC---TA 60055196
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | ||||| ||||| || | |||||
Sbjct 60055195 CAACATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACT 60055154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445702438093680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |