Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 2e-32
seq1 134 2e-26
seq11 111 2e-19
seq3 107 2e-18
seq14 96.9 4e-15
seq21 84.2 3e-11
>seq2
Length=63256308
Score = 154 bits (170), Expect = 2e-32
Identities = 201/278 (72%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 188378 GGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATCTG 188437
|||||| | || ||||||| || |||||||| |||||| ||| | |||||| || |
Sbjct 35390678 GGATCTTTGGGTCTGATTTTAGCCATGACTTTAAACAGACCTAAGCTTCCCCTTAACCCA 35390737
Query 188438 TACCTACTTTGTGGATTTACACTGTTAGAATCTCTAACGCTGGCCTCTGTTGTTACTTTC 188497
||||| |||| || ||||| |||||| ||| |||| || |||||| |||||||||||
Sbjct 35390738 TACCTGCTTTTTGTATTTATACTGTTGGAAGCTCTGACTGTGGCCTTCATTGTTACTTTC 35390797
Query 188498 TATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTTCTTGCTCTG 188557
| ||||| ||| || | |||| ||| || |||| |||||| |||| || |
Sbjct 35390798 TGTGATGTATATATTGTCCTGCAAGATTTTATACTGACCCGTGCAGTATTTCCTGGTTCA 35390857
Query 188558 ACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGGATTGTTTGCT 188617
||| | |||| | ||||| ||||||| | ||| ||| ||| | |||| | ||| ||
Sbjct 35390858 ACTGTGTATACTTTGCAATCTGAGAGAGAGTGCAGCAAATTTGGAGCAGGCCTATTTTCT 35390917
Query 188618 GCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655
| || |||||||| ||||||||| ||||| |||
Sbjct 35390918 GACTTGTGGATTTTGTGCTTGTCAGGAACCTTGAAGAT 35390955
>seq1
Length=104504130
Score = 134 bits (148), Expect = 2e-26
Identities = 112/137 (82%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 62744999 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 62745058
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 62745059 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 62745118
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 62745119 CTGTTTCTTATACCATA 62745135
Score = 104 bits (114), Expect = 3e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678
|| ||| |||| || |||||||| || | || || || || | ||| || || || ||
Sbjct 62750794 GAGCCTTCATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 62750853
Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738
|| || |||||||||||||||||||||| |||||| | || || || || || |||
Sbjct 62750854 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 62750913
Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798
|| || || | | |||||||| || || || | ||||| || ||||| || || ||
Sbjct 62750914 AAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 62750973
Query 62799 CTATGTCTCTTATTAGA 62815
| ||| | ||||| ||
Sbjct 62750974 CGATGGCGTTTATTCGA 62750990
Score = 96.9 bits (106), Expect = 4e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722
|| || ||||| || | || ||||| || || |||||||| || |||||||| || |||
Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268
Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782
|| || |||||||| | || ||||| || ||||| || || | || | ||| |||
Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328
Query 63783 ATGTGCTGAGGTCTTTCA 63800
|||||||| |||||||||
Sbjct 62719329 ATGTGCTGTGGTCTTTCA 62719346
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||| ||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 62757236 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 62757295
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 62757296 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 62757355
Query 63383 CGGTTCCAAGTATATGGC 63400
||||||| ||| || ||
Sbjct 62757356 AGGTTCCAGGTAAATAGC 62757373
>seq11
Length=140388259
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || |
Sbjct 25930473 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 25930414
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| ||||| || || || || |||||||||||||| ||||| ||||| |||||||
Sbjct 25930413 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 25930354
Query 33724 C 33724
|
Sbjct 25930353 C 25930353
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| ||||| || || | |||||||||||||| ||||| |||||||| |||||
Sbjct 25928509 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 25928450
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||| | || ||||||||||| ||||||
Sbjct 25928449 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 25928404
>seq3
Length=88455658
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | | | || | ||||||||||| ||||| |||||| |||
Sbjct 61291660 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 61291719
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | ||||
Sbjct 61291720 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 61291778
Score = 100 bits (110), Expect = 4e-16
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 61276167 TGCTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 61276226
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 61276227 ATCCGAATGG 61276236
>seq14
Length=103589943
Score = 96.9 bits (106), Expect = 4e-15
Identities = 177/257 (69%), Gaps = 7/257 (3%)
Strand=Plus/Minus
Query 31299 TCCTGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 31356
||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| |||||
Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 76501736
Query 31357 TCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTT 31416
|| | |||||| ||| |||| |||| | | || ||||| || |||| ||| || | ||
Sbjct 76501735 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 76501676
Query 31417 ACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 31476
|| | |||| | ||| ||| ||||| || | || || | ||||| |||||||||
Sbjct 76501675 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 76501616
Query 31477 TCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGA 31533
|| ||||| ||| | |||| | ||| || | |||| | || ||||| | ||||
Sbjct 76501615 TCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 76501556
Query 31534 GCTATTCTACCATAGCA 31550
|| | ||| ||||||||
Sbjct 76501555 GCCACTCTTCCATAGCA 76501539
>seq21
Length=107358006
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 81517103 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATAAAA 81517044
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081
|| || || |||| | | || || ||||| | | | ||| || |||| ||| ||
Sbjct 81517043 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 81516988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629727229047120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |