Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 96.9 3e-15
>seq1
Length=104504130
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || || || ||||| ||||||||
Sbjct 62744999 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 62745058
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | ||||| |||| || || ||||||||||| || || || || |
Sbjct 62745059 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 62745118
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 62745119 CTGTTTCTTATACCAT 62745134
Score = 86.0 bits (94), Expect = 6e-12
Identities = 110/150 (73%), Gaps = 4/150 (3%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| |||
Sbjct 62742784 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGT 62742843
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATAC--A 36980
||| || || |||||||| || || || ||||| |||||||||| ||| | |||
Sbjct 62742844 TCAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCTGCCA--TCTTGAGTACGGT 62742901
Query 36981 TTTTTGAGATATCTCCCAAACCGTTTTATA 37010
||| ||||| || ||||| || || |||||
Sbjct 62742902 TTTCTGAGAGATTTCCCACACAGTCTTATA 62742931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468457572547760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |