Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 183 4e-41 seq3 174 2e-38 seq1 140 4e-28 seq11 105 9e-18 seq14 87.8 2e-12 >seq2 Length=63256308 Score = 183 bits (202), Expect = 4e-41 Identities = 222/301 (74%), Gaps = 1/301 (0%) Strand=Plus/Minus Query 9407 CTCCACTGTTTCACTTTGCACAAATATCCTCAAAAGTCCTGACAAAATTAAAATCCACAA 9466 ||||| |||||| | | | ||| ||| |||| ||||||||| ||||||||||| Sbjct 35390979 CTCCATTGTTTCGCCATAAA-AAACATCTTCAAGGTTCCTGACAAGCACAAAATCCACAA 35390921 Query 9467 AGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGC 9526 | ||| | |||||||||| ||| ||| | ||||||| ||||| | |||||| | Sbjct 35390920 GTCAGAAAATAGGCCTGCTCCAAATTTGCTGCACTCTCTCTCAGATTGCAAAGTATACAC 35390861 Query 9527 AGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATC 9586 ||| | || |||| |||||| ||||| || ||| |||||| || | || ||||| Sbjct 35390860 AGTTGAACCAGGAAATACTGCACGGGTCAGTATAAAATCTTGCAGGACAATATATACATC 35390801 Query 9587 ATAGAAAGTAACAACAGAGGCCAGCGTTAGAGATTCCGACAGTGTAAATCCACAAAGCAG 9646 | |||||||||||| |||||| || |||| |||| ||||| ||||| || ||||||| Sbjct 35390800 ACAGAAAGTAACAATGAAGGCCACAGTCAGAGCTTCCAACAGTATAAATACAAAAAGCAG 35390741 Query 9647 GTATAAATTCAGGGGATGTTTATGTCTGTGTAAAGTCAATGCGAAAATCAAGCCTATAGA 9706 |||| || |||||| | ||| |||||| |||||||| || ||||||| || | ||| Sbjct 35390740 GTATGGGTTAAGGGGAAGCTTAGGTCTGTTTAAAGTCATGGCTAAAATCAGACCCAAAGA 35390681 Query 9707 T 9707 | Sbjct 35390680 T 35390680 Score = 109 bits (120), Expect = 7e-19 Identities = 125/164 (76%), Gaps = 7/164 (4%) Strand=Plus/Minus Query 9229 ATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCA-AGAACAGATTGATGATATCC 9287 |||| ||||| | ||||||||| ||| || | ||| | || || |||| ||||||| Sbjct 35391370 ATTTTCTATTAATTGCTTCCAAAACCTGCAA---AGGCATAAAAGAGGTTGAGGATATCC 35391314 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||| ||| |||||| ||||| ||||| |||||||| || ||| ||| || |||| | Sbjct 35391313 AAGCAGAGGCTGATAGCAGCTAATACATACTCTTCAGGTGACAGCCTATACATCAGTGTG 35391254 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGG-GCCCCAA 9390 || |||||||||| ||||||| |||||| | |||| |||||| Sbjct 35391253 TG--TGTCATAGATGATGAATCTGCAGAAAAGAAGGAACCCCAA 35391212 >seq3 Length=88455658 Score = 174 bits (192), Expect = 2e-38 Identities = 153/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | | | ||| |||||||| ||||||||||||||||| Sbjct 61294702 TTTTTATTAACTGCTTCCAAAACCCGCAGCAGGTGCAAGAAGAGATTGATGATATCCAAA 61294643 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| || || |||||||| Sbjct 61294642 TAGAGGTTGATGGCCGCTAATACATACTCTTCAGGTGACAGCCGGTGCATCAGTGAGTGT 61294583 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||||||||| | | ||| ||| ||||| || ||||| |||| Sbjct 61294582 GTGTCATAGATGATGAATCCGCAGAAAAGGATGGCTCCACCAGCAGCCAAGACCAACTCC 61294523 Query 9411 ACTGTTTCACT 9421 ||||| ||||| Sbjct 61294522 ACTGTCTCACT 61294512 Score = 147 bits (162), Expect = 3e-30 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| |||||||||||||| || |||||||||||| |||||| | ||||| Sbjct 61291778 CCTGCTCCAAATTTGCTGAAATCTCTCTTAGACTGTAGAGTATATACAGTCAAACCAAGA 61291719 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||| |||||| ||||||||||||| || |||| |||||||||||||||||| Sbjct 61291718 AATACTGCACAAGTCAGTATGAAAGCTTGCAGGACAACATACACATCATAGAAAGTAAC 61291660 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 61276236 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 61276177 Query 9907 TGGAGGAGCACGCGTAGAGG 9926 |||||||||| | |||| || Sbjct 61276176 TGGAGGAGCAGGGGTAGCGG 61276157 >seq1 Length=104504130 Score = 140 bits (154), Expect = 4e-28 Identities = 113/137 (82%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | Sbjct 62744999 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATT 62745058 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 62745059 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 62745118 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 62745119 CTGTTTCTTATACCATA 62745135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 65412 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 65471 || ||| |||| || || ||||| || | || || || || ||||| || || || || Sbjct 62750794 GAGCCTTCATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAG 62750853 Query 65472 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCA 65531 || || |||||||||||||| ||||||| |||||| | || || || | || ||| Sbjct 62750854 GCTCCATAATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCA 62750913 Query 65532 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGT 65591 || || || | | |||||||| || ||||| | ||||| || ||||| || || || Sbjct 62750914 AAAGGGTACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGG 62750973 Query 65592 CTATGTCTCTTATTAGA 65608 | ||| | ||||| || Sbjct 62750974 CGATGGCGTTTATTCGA 62750990 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 || || ||||| || | || ||||| || || |||||||| || |||||||| || ||| Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 || || |||||||| | || ||||| || ||||| || || | || | ||| ||| Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328 Query 66576 ATGTGCTGAGGTCTTTCA 66593 |||||||| ||||||||| Sbjct 62719329 ATGTGCTGTGGTCTTTCA 62719346 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | || || ||||| || || || || | | Sbjct 62766485 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 62766544 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | ||||| | || || ||| | || || |||| ||| |||| Sbjct 62766545 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 62766604 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| |||||||| || ||||| Sbjct 62766605 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCAT 62766650 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||| ||||| |||||||| ||||||||||| || | || | || |||| | Sbjct 62757236 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 62757295 Query 66116 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCA 66175 || || || |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 62757296 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 62757355 Query 66176 CGGTTCCAAGTATATGGC 66193 ||||||| ||| || || Sbjct 62757356 AGGTTCCAGGTAAATAGC 62757373 >seq11 Length=140388259 Score = 105 bits (116), Expect = 9e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 25928509 ATCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 25928450 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| || || |||||||| | || ||||||||||| |||||| Sbjct 25928449 AATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCT 25928404 >seq14 Length=103589943 Score = 87.8 bits (96), Expect = 2e-12 Identities = 175/257 (68%), Gaps = 7/257 (3%) Strand=Plus/Minus Query 33900 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 33957 ||| || || ||||| ||| ||| | ||| | ||| ||||| | ||| ||||| Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTC--ATCTAAAACTTGAACTTCC 76501736 Query 33958 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 34017 | | |||||| ||| |||| |||| | | || ||||| || |||| ||| ||| | || Sbjct 76501735 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 76501676 Query 34018 ACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 34077 || | || | ||| ||| ||||| || | || || | |||||| ||||||||| Sbjct 76501675 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 76501616 Query 34078 TCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGA 34134 || ||||| ||| | |||| | ||| || |||| | || ||||| | |||| Sbjct 76501615 TCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 76501556 Query 34135 GCTATTCTACCATAGCA 34151 || | ||| |||||||| Sbjct 76501555 GCCACTCTTCCATAGCA 76501539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658078360430360