Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq24 159 8e-34
seq5 129 1e-24
seq31 120 7e-22
seq12 109 1e-18
seq11 104 5e-17
seq28 100 7e-16
seq4 86.0 1e-11
>seq24
Length=78163535
Score = 159 bits (176), Expect = 8e-34
Identities = 162/211 (77%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|||||||| | || || || || ||||| || |||||||| | ||| | || |||||
Sbjct 22107639 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 22107698
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||| || |||||||| || || || || || |||||||| |||||||| ||||||||
Sbjct 22107699 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 22107758
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| || ||||||||||||| ||||| ||||| ||||| || || || |||||
Sbjct 22107759 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 22107818
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTT 104561
|| || || || || || || || |||||||
Sbjct 22107819 CCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq5
Length=178027732
Score = 129 bits (142), Expect = 1e-24
Identities = 157/212 (74%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGT---TCTACCG-TC 104406
|| ||||| | || || || || ||||| || |||||||| | ||| || | | ||
Sbjct 42512312 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCATCTATC 42512371
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| ||||| || |||||||| || || || || || |||||||| |||||||| |||||
Sbjct 42512372 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 42512431
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||| ||||| || ||||||||||||| | |||| || | ||||| || || || ||
Sbjct 42512432 CTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGATGGT 42512491
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558
||| || || || || | || || |||||||
Sbjct 42512492 CTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
>seq31
Length=75455120
Score = 120 bits (132), Expect = 7e-22
Identities = 122/159 (77%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| ||||| || |||||||| || || || || || |||||||| | |||||| |||
Sbjct 60055214 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 60055273
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
||||| ||||| || ||||||||||||| ||||| || |||||||| || || ||
Sbjct 60055274 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 60055333
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| | || || || || | || |||||||| |||
Sbjct 60055334 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 60055372
>seq12
Length=127780087
Score = 109 bits (120), Expect = 1e-18
Identities = 166/236 (70%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382
||| || || || || | || || | |||||||| | | || || || ||||| |
Sbjct 13420471 TTTCTTAATACCACCACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCT 13420412
Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442
|||||| | || || ||||| ||||| || |||||||| || || || |||||
Sbjct 13420411 GTAGTCAAAGTATGT----CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTG 13420356
Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502
||||||| |||| ||| |||| ||| ||||| || ||||||||||||| |||||
Sbjct 13420355 GCCAGGAGGAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 13420296
Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558
|| | ||||| || || || ||||| | | || || || ||||| |||||||
Sbjct 13420295 GGGCTTGACCTCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240
>seq11
Length=140388259
Score = 104 bits (114), Expect = 5e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || |||||||| || |||| ||| | || | | |||||
Sbjct 76921579 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTATCTTCC 76921520
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| |||||||||| || || || || || |||||||| | |||||| |||||||||
Sbjct 76921519 AGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGA 76921460
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTT 104529
||||| || ||| ||||||||| |||| | || | | |||| || | || || |
Sbjct 76921459 ATCTTGGCCTTTGCATTTTCTATCATATC-CAAGAGCTTGACCTTGAGAGAGATGCTCAT 76921401
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || || || || || || | ||||||| ||
Sbjct 76921400 CCCTGTCAGGGTCTTCACGAAAACCTGCATTCTG 76921367
>seq28
Length=82073021
Score = 100 bits (110), Expect = 7e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | ||| ||||||||||| || || | || || | || || ||||| |
Sbjct 24730125 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 24730066
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| || ||| | |||||| || || |||||||| | || |||||||| |||
Sbjct 24730065 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTTACCTTG 24730006
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648
| ||||| || ||||| ||| || ||||||||||
Sbjct 24730005 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 24729971
>seq4
Length=81198604
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/197 (70%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || |||||||| || || |||||||| || || | ||||| || ||||| ||
Sbjct 5807540 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCT 5807481
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | |||||| || | || | | || |||| | ||||| || ||
Sbjct 5807480 GCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCTCTT------GGATCTTGGCCTTG 5807427
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||| || | ||| || || || || ||||| || || || ||||||||||| | ||
Sbjct 5807426 GCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5807367
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 5807366 TTCACGAAGATCTGCAT 5807350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151229058440132
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |