Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq24 159 8e-34 seq5 129 1e-24 seq31 120 7e-22 seq12 109 1e-18 seq11 104 5e-17 seq28 100 7e-16 seq4 86.0 1e-11 >seq24 Length=78163535 Score = 159 bits (176), Expect = 8e-34 Identities = 162/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 |||||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 22107639 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 22107698 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||| || |||||||| || || || || || |||||||| |||||||| |||||||| Sbjct 22107699 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 22107758 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| ||||| ||||| ||||| || || || ||||| Sbjct 22107759 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 22107818 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTT 104561 || || || || || || || || ||||||| Sbjct 22107819 CCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq5 Length=178027732 Score = 129 bits (142), Expect = 1e-24 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGT---TCTACCG-TC 104406 || ||||| | || || || || ||||| || |||||||| | ||| || | | || Sbjct 42512312 ACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCATCTATC 42512371 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| ||||| || |||||||| || || || || || |||||||| |||||||| ||||| Sbjct 42512372 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 42512431 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || ||||||||||||| | |||| || | ||||| || || || || Sbjct 42512432 CTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGATGGT 42512491 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 ||| || || || || | || || ||||||| Sbjct 42512492 CTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 >seq31 Length=75455120 Score = 120 bits (132), Expect = 7e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| ||||| || |||||||| || || || || || |||||||| | |||||| ||| Sbjct 60055214 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 60055273 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 ||||| ||||| || ||||||||||||| ||||| || |||||||| || || || Sbjct 60055274 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 60055333 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | || || || || | || |||||||| ||| Sbjct 60055334 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTTG 60055372 >seq12 Length=127780087 Score = 109 bits (120), Expect = 1e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 104323 TTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATT 104382 ||| || || || || | || || | |||||||| | | || || || ||||| | Sbjct 13420471 TTTCTTAATACCACCACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCT 13420412 Query 104383 ATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTG 104442 |||||| | || || ||||| ||||| || |||||||| || || || ||||| Sbjct 13420411 GTAGTCAAAGTATGT----CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTG 13420356 Query 104443 ATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 ||||||| |||| ||| |||| ||| ||||| || ||||||||||||| ||||| Sbjct 13420355 GCCAGGAGGAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGA 13420296 Query 104503 AGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCA 104558 || | ||||| || || || ||||| | | || || || ||||| ||||||| Sbjct 13420295 GGGCTTGACCTCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240 >seq11 Length=140388259 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || |||||||| || |||| ||| | || | | ||||| Sbjct 76921579 ACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTATCTTCC 76921520 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||| |||||||||| || || || || || |||||||| | |||||| ||||||||| Sbjct 76921519 AGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGA 76921460 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || ||| ||||||||| |||| | || | | |||| || | || || | Sbjct 76921459 ATCTTGGCCTTTGCATTTTCTATCATATC-CAAGAGCTTGACCTTGAGAGAGATGCTCAT 76921401 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || || || || || | ||||||| || Sbjct 76921400 CCCTGTCAGGGTCTTCACGAAAACCTGCATTCTG 76921367 >seq28 Length=82073021 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | ||| ||||||||||| || || | || || | || || ||||| | Sbjct 24730125 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 24730066 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| || ||| | |||||| || || |||||||| | || |||||||| ||| Sbjct 24730065 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTTACCTTG 24730006 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | ||||| || ||||| ||| || |||||||||| Sbjct 24730005 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 24729971 >seq4 Length=81198604 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || |||||||| || || | ||||| || ||||| || Sbjct 5807540 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCT 5807481 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | |||||| || | || | | || |||| | ||||| || || Sbjct 5807480 GCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCTCTT------GGATCTTGGCCTTG 5807427 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||| || | ||| || || || || ||||| || || || ||||||||||| | || Sbjct 5807426 GCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5807367 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 5807366 TTCACGAAGATCTGCAT 5807350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151229058440132