Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq14 109 5e-19 >seq14 Length=103589943 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| |||| || ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 5428415 GGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGATGCCACAGGCT 5428356 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || || || || || || || || ||||| || || ||||| || ||||||||||| Sbjct 5428355 GAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGAAGCTGAAGACC 5428296 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || |||||| | ||||| Sbjct 5428295 CTCCGGCTGCGACTGAGGCGCTG 5428273 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || |||||||| ||||||| ||||| ||||| ||||| || ||||| ||||||||||| Sbjct 5433330 GGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGATGCCACAGGCT 5433389 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || || || || || || || || || || || || ||||| || ||||| ||||| Sbjct 5433390 GAGAACCATGGGCCTGAGATCAAGGAGCATGTTAACTCGCTGGGGGAGAAGCTAAAGACC 5433449 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | || |||||| | | ||| Sbjct 5433450 CTCCGGCTGCGACTGAGGCACTG 5433472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429994235255048