Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq12 105 8e-18 >seq12 Length=127780087 Score = 105 bits (116), Expect = 8e-18 Identities = 148/205 (72%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 164500 TTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACA 164559 |||||||| |||||| | ||||| || | ||| |||| ||||| ||||||||||| ||| Sbjct 89055826 TTAGGCTGCAAACATGTTAAAGGCATCCTGTTATATGGGCCTCCAGGTTGCGGTAAGACA 89055767 Query 164560 TTAATGGCTCGATGCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAAT 164616 || |||||||| |||| ||| | || ||| | || || |||| | || || Sbjct 89055766 CTATTGGCTCGACAGATTG-GCAAAATGTTGAATGCAAGAGAGCC--TAAAGTGGTCAAC 89055710 Query 164617 GGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTT 164676 || || ||| | | ||||||||||| || |||||||| ||||| || | || | ||| Sbjct 89055709 GGGCCGGAAATTCTCAACAAATATGTGGGAGAGTCAGAGGCTAACATTCGTAAACTCTTT 89055650 Query 164677 CAGGAGGCTGAAGAAGAACAAAAGA 164701 || |||||||| || |||| || Sbjct 89055649 GCTGATGCTGAAGAGGAGCAAAGGA 89055625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595786499816400