Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq7 84.2 1e-11
seq3991 82.4 4e-11
seq5 82.4 4e-11
seq1 82.4 4e-11
>seq7
Length=66841537
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 38432852 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 38432911
Query 11512 CAACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 38432912 CAACTGAGCTAACCGGCC 38432929
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 38692903 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 38692844
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 38692843 CTGAGCTAACCGGCC 38692829
Score = 84.2 bits (92), Expect = 1e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511
||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||
Sbjct 39230642 AAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAAC 39230583
Query 11512 CAACTGAGCTAATGGGCC 11529
|||||||||||| ||||
Sbjct 39230582 CAACTGAGCTAACCGGCC 39230565
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 38434505 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 38434564
Query 11528 CC 11529
||
Sbjct 38434565 CC 38434566
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 38742820 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 38742761
Query 11528 CC 11529
||
Sbjct 38742760 CC 38742759
>seq3991
Length=2316
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 602 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 661
Query 11528 CC 11529
||
Sbjct 662 CC 663
>seq5
Length=178027732
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 131908780 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 131908721
Query 11528 CC 11529
||
Sbjct 131908720 CC 131908719
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 131953661 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 131953720
Query 11528 CC 11529
||
Sbjct 131953721 CC 131953722
>seq1
Length=104504130
Score = 82.4 bits (90), Expect = 4e-11
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515
|||||||| || ||||| |||| ||||||| | ||||||||||| || |||| ||||||
Sbjct 45927072 TGGCCCATAAAGGGATCAAACCCACGACCTTGGTGTTATTAGCACCACACTCTAACCAAC 45927131
Query 11516 TGAGCTAATGGGCC 11529
|||||||| ||||
Sbjct 45927132 TGAGCTAACTGGCC 45927145
Lambda K H
0.640 0.410 0.922
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261454617299404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |