Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq14 140 4e-28 >seq14 Length=103589943 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || | Sbjct 5428426 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5428367 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || | ||| |||||||||||||| ||||| |||| Sbjct 5428366 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 5428307 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | || |||||||| |||| || Sbjct 5428306 AGCTGAAGACCCTCCGGCTGCG 5428285 Score = 140 bits (154), Expect = 4e-28 Identities = 116/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||||||||||||||||||||||||||| || | Sbjct 5433319 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5433378 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 ||||||||||||| || || | || | ||| ||||| || ||||| ||||| |||| Sbjct 5433379 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCATGTTAACTCGCTGGGGGAGA 5433438 Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281 | ||||||||||| |||| || Sbjct 5433439 AGCTAAAGACCCTCCGGCTGCG 5433460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || | || |||||||||||||||||||| |||||||| || || ||||| | Sbjct 5426126 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5426067 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||| ||| ||||| || Sbjct 5426066 TAGAAACCTACACGACAATGAAGAT 5426042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547300657927040