Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq14 140 4e-28
>seq14
Length=103589943
Score = 140 bits (154), Expect = 4e-28
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| |||| |||||||||||||||||||||||||| || |
Sbjct 5428426 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5428367
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
||||||||||||| || || | || | ||| |||||||||||||| ||||| ||||
Sbjct 5428366 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGGAGA 5428307
Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281
| || |||||||| |||| ||
Sbjct 5428306 AGCTGAAGACCCTCCGGCTGCG 5428285
Score = 140 bits (154), Expect = 4e-28
Identities = 116/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || ||| ||||||||||||||||||||||||||||||| || |
Sbjct 5433319 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5433378
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
||||||||||||| || || | || | ||| ||||| || ||||| ||||| ||||
Sbjct 5433379 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCATGTTAACTCGCTGGGGGAGA 5433438
Query 10260 ATCTAAAGACCCTAAGGCTTCG 10281
| ||||||||||| |||| ||
Sbjct 5433439 AGCTAAAGACCCTCCGGCTGCG 5433460
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || | || |||||||||||||||||||| |||||||| || || ||||| |
Sbjct 5426126 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5426067
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||| | |||| ||| ||||| ||
Sbjct 5426066 TAGAAACCTACACGACAATGAAGAT 5426042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547300657927040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |