Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq14 170 3e-37
seq11 113 6e-20
>seq14
Length=103589943
Score = 170 bits (188), Expect = 3e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || || | |||||||||||| ||| |||| || ||||| ||||||
Sbjct 87015479 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 87015420
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||||||||||| ||||| || || || |||||||| |||||||||||||| |||||
Sbjct 87015419 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 87015360
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | || | ||| || || | || || |||||||| |
Sbjct 87015359 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 87015300
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
||||| ||||||||| | ||| |||||||| || || | ||| ||||
Sbjct 87015299 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 87015251
Score = 156 bits (172), Expect = 6e-33
Identities = 219/305 (72%), Gaps = 2/305 (1%)
Strand=Plus/Minus
Query 8673 GAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAG 8732
|||| | ||| | || || ||||| ||||| ||||| || |||| |||||||| || |
Sbjct 87017155 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 87017096
Query 8733 TTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAAC 8792
||| | |||| ||| ||| || || ||||| || || ||||| || ||||||||
Sbjct 87017095 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 87017036
Query 8793 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCT-CG 8851
| || || || || || |||| || ||||| ||||| || || || || |||| |
Sbjct 87017035 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCC-AGCTTCT 87016977
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| ||| |||| || |||||||||| ||||| ||||| || |||| | ||| |||
Sbjct 87016976 ACCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATAC 87016917
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971
| ||||| || || ||||||||||| || || | || ||||| |||||||| |||
Sbjct 87016916 AGCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCT 87016857
Query 8972 CCTGT 8976
|||||
Sbjct 87016856 CCTGT 87016852
Score = 111 bits (122), Expect = 2e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
|||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | ||
Sbjct 87014462 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 87014403
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||| ||||||||
Sbjct 87014402 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 87014343
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186
||| |||| | || | ||||| ||||| ||||||
Sbjct 87014342 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 87014304
>seq11
Length=140388259
Score = 113 bits (124), Expect = 6e-20
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812
|| ||||| || || || || ||||| | |||||||| | || || |||||| ||||
Sbjct 18776628 AAGCCCACCTCACCACCAAATGTGCTTGCCTTCCAGTACTCTGGAGAACAGATGGGGTTC 18776687
Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872
| | |||||| || |||||||| |||||||||| || | || ||||| || ||||||
Sbjct 18776688 CCTAAGAGGCCCTTAAGGGAAAAAGGAGCCCCCATTTCTATCATACTCTCCCCAAAGATG 18776747
Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932
| | | ||| || ||| || | | | || | ||| || |||| ||| |||||||||
Sbjct 18776748 GAGCTCGGATGGCACTTCTCAAGAAGCAGCCCTGGGTAGAATTCCAAAGCATCGATGTCT 18776807
Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
|| || || || | ||| || || || ||||| || |||
Sbjct 18776808 CCATATAGCTCCTCCAATTCAGCTGCCATCTCCTTCTCACCT 18776849
Score = 87.8 bits (96), Expect = 3e-12
Identities = 117/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669
|| ||||| | |||||| || | ||||| || || |||||||| | ||| || ||
Sbjct 18787031 TCACCGATGAGGATGAGGCGGGCCGTCTGGAAGAGCTGTTCGTCGCCCCAGGTGGGGTGC 18787090
Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729
|| ||||| | || ||||| | |||||| || | |||||||| || ||||| | |
Sbjct 18787091 TCAGCCTTCAGCAGGTCACACACGCGGTTGTGCTCACGCAGCCAGATGGTGGCGTAGAGC 18787150
Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9772
||||||||||| | ||| ||||| | || || || || ||||
Sbjct 18787151 ATGAGACCAGGAAGCAGCCCAAACACTTCCTGGCCCACGGCCA 18787193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708423135547760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |