Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq14 113 4e-20 seq13 107 2e-18 seq23 104 2e-17 seq4 84.2 2e-11 >seq14 Length=103589943 Score = 113 bits (124), Expect = 4e-20 Identities = 222/326 (68%), Gaps = 2/326 (1%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || |||| || | ||| |||||| ||||| ||||||||||||||| || |||| || | Sbjct 76501743 GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCAC 76501684 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 ||| || | ||| | | || | || || || || || || || ||||| | Sbjct 76501683 CCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTC 76501624 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| ||||| || | || || || ||||| ||| | |||||||||| | Sbjct 76501623 TATAATCTTCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAG 76501564 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | ||||| || ||||| || ||| | ||||| | | ||||| ||||| | Sbjct 76501563 AACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA 76501504 Query 43849 CGAG-GCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCG 43907 | || || | || | ||| || | |||| | |||||||||||| ||||| || Sbjct 76501503 CAAGCACTTTCTCC-ATCGGTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCC 76501445 Query 43908 GCGGAGAGCTTGGATCCTTTGGTGGG 43933 |||| | || ||| || |||||||| Sbjct 76501444 GCGGCGCGCGCGGACCCCTTGGTGGG 76501419 >seq13 Length=89791019 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || || | ||||||||||| || || || || || | || || || | Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||||||||||||||| || | ||||| | | ||||| || || || Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | ||||| || ||||| | | |||||| | | ||||| Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || ||||||||||||||||| Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| || | |||| ||||| || || || || || | ||| ||||| Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| ||||||| | || ||||| || || ||| Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| ||| ||| |||||| | | || || Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||| ||||| Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358 >seq4 Length=81198604 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/238 (68%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 || || | || |||| ||||| | || |||||||||| ||| || || || || | || Sbjct 5807581 AACTTAAAACACCTCGCCTCAAGCACAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 5807522 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || || || |||| ||| ||||||||||| || ||||||| || || |||| Sbjct 5807521 TGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCT 5807462 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 | | || | | || |||| | || || |||||| | ||| |||||| Sbjct 5807461 GGTTCGGGGAGGTGCCCTCTTGG------ATCTTGGCCTTGGCATTCTCGATGGTGTCAC 5807408 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | |||||||| || ||||| | || ||||| ||||||||||| Sbjct 5807407 TGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448226875816440