Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq14 113 4e-20
seq13 107 2e-18
seq23 104 2e-17
seq4 84.2 2e-11
>seq14
Length=103589943
Score = 113 bits (124), Expect = 4e-20
Identities = 222/326 (68%), Gaps = 2/326 (1%)
Strand=Plus/Minus
Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668
|| |||| || | ||| |||||| ||||| ||||||||||||||| || |||| || |
Sbjct 76501743 GAACTTCCTCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCAC 76501684
Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728
||| || | ||| | | || | || || || || || || || ||||| |
Sbjct 76501683 CCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTC 76501624
Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788
|||| ||||| ||||| || | || || || ||||| ||| | |||||||||| |
Sbjct 76501623 TATAATCTTCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAG 76501564
Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848
| | | ||||| || ||||| || ||| | ||||| | | ||||| ||||| |
Sbjct 76501563 AACGAGGAGCCACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA 76501504
Query 43849 CGAG-GCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCG 43907
| || || | || | ||| || | |||| | |||||||||||| ||||| ||
Sbjct 76501503 CAAGCACTTTCTCC-ATCGGTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCC 76501445
Query 43908 GCGGAGAGCTTGGATCCTTTGGTGGG 43933
|||| | || ||| || ||||||||
Sbjct 76501444 GCGGCGCGCGCGGACCCCTTGGTGGG 76501419
>seq13
Length=89791019
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| |||| || || | ||||||||||| || || || || || | || || || |
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||||||||||||||| || | ||||| | | ||||| || || ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || || ||||| | ||||| || ||||| | | |||||| | | |||||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||| |||||||| || || || || || |||||||||||||||||
Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq23
Length=109465363
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || |||| || | |||| ||||| || || || || || | ||| |||||
Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| |||| | ||| ||||||||||| ||| ||||||| | || ||||| || || |||
Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| || || | || || ||||| ||| ||| |||||| | | || ||
Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || ||||| ||||| |||||
Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358
>seq4
Length=81198604
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/238 (68%), Gaps = 6/238 (3%)
Strand=Plus/Minus
Query 94770 AATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829
|| || | || |||| ||||| | || |||||||||| ||| || || || || | ||
Sbjct 5807581 AACTTAAAACACCTCGCCTCAAGCACAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGT 5807522
Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889
| || || || |||| ||| ||||||||||| || ||||||| || || ||||
Sbjct 5807521 TGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCT 5807462
Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949
| | || | | || |||| | || || |||||| | ||| ||||||
Sbjct 5807461 GGTTCGGGGAGGTGCCCTCTTGG------ATCTTGGCCTTGGCATTCTCGATGGTGTCAC 5807408
Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || || | |||||||| || ||||| | || ||||| |||||||||||
Sbjct 5807407 TGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448226875816440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |