Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq7 183 5e-42 seq20 138 2e-28 seq22 129 9e-26 seq9 113 7e-21 >seq7 Length=66841537 Score = 183 bits (202), Expect = 5e-42 Identities = 197/261 (75%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| |||||| ||||||||||| || ||||||||||| || || Sbjct 39194720 CGCTAAGCGTCACCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 39194779 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || ||||| ||||| ||||| | ||||| | ||||||| |||| Sbjct 39194780 CCGTCGTCTGGCCCGGCGTGGAGGAGTTAAGCGCATTTCTGGCCTCATCTATGAGGAGAC 39194839 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| | | ||| |||| ||||| || || ||||| Sbjct 39194840 CCGCGGGGTGTTGAAGGTGTTCCTGGAAAACGTGATCCGCGATGCGGTCACTTACACCGA 39194899 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || || ||||||||| | |||||| | ||||| || ||||||| || || Sbjct 39194900 GCATGCCAAGCGCAAAACTGTCACCGCTATGGATGTGGTCTACGCGCTGAAACGCCAGGG 39194959 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 39194960 CCGCACCCTCTACGGCTTTGG 39194980 Score = 181 bits (200), Expect = 2e-41 Identities = 199/262 (76%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||||| | |||| || || || ||||| || || || |||||||||| Sbjct 39382556 CGCTAAGCGCCATCGCAAAG-TCTTGCGGGACAATATCCAGGGTATTACTAAGCCAGCTA 39382498 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| |||||||| ||||| ||| |||| || | |||| ||||||| Sbjct 39382497 TCCGGCGTCTTGCTCGGCGTGGTGGGGTCAAACGTATCTCCGGTCTTATCTACGAAGAGA 39382438 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||||| || |||| | || || | | || |||| ||| || || ||| || | Sbjct 39382437 CTCGTGGGGTGCTGAAAGTGTTTCTGGAAAATGTGATCCGTGACGCGGTCACCTACACGG 39382378 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || |||||||| ||| ||||||| ||||||| || | |||||||| | Sbjct 39382377 AGCACGCCAAGCGCAAGACTGTTACCGCCATGGACGTCGTCTACGCGCTCAAACGTCAGG 39382318 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||||| |||| |||||||| Sbjct 39382317 GCCGTACTCTTTACGGTTTTGG 39382296 Score = 176 bits (194), Expect = 7e-40 Identities = 202/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | ||| || || |||||||| || ||||| ||||| ||||| Sbjct 39461812 CGCTAAGCGCCACCGTAAGGTTCTGCGCGACAACATCCAGGGCATCACTAAGCCTGCTAT 39461753 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||||||||| || || ||||| ||||||| | |||| ||||||| Sbjct 39461752 CCGCCGCCTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAAGAGAC 39461693 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| | || || ||| ||| |||| ||||| || ||| ||||| Sbjct 39461692 CCGCGGCGTCCTGAAAGTGTTTCTGGAGAACGTGATCCGGGATGCAGTCACCTACACCGA 39461633 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 || || || || |||||||||||| | |||||| | |||||||| | || || || || Sbjct 39461632 ACATGCCAAGCGGAAGACTGTCACCGCTATGGATGTGGTCTATGCTCTCAAGCGCCAGGG 39461573 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||||| | ||||||||||| ||||| ||| Sbjct 39461572 CCGTACTCTCTATGGTTTTGGTGGTTAACCTT 39461541 Score = 161 bits (178), Expect = 2e-35 Identities = 196/267 (73%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| ||| || || || ||||| || ||||||||||| ||||| Sbjct 38304273 GCTAAGCGCCACCGCAAGGTTCTGCGCGACAATATCCAGGGCATCACCAAGCCCGCTATT 38304332 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||||||||||||||| || ||||| |||| || | |||||||||||| | Sbjct 38304333 CGTCGTCTGGCTCGTCGTGGTGGTGTAAAGCGAATCTCCGGTCTTATCTATGAAGAGACT 38304392 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||| | || || | | || || | || ||| || ||| || ||| Sbjct 38304393 CGTGGGGTGCTGAAGGTGTTTCTGGAAAATGTGATACGGGACGCTGTCACCTACACTGAG 38304452 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || ||||||||| | ||||| | ||||| || | || || || || Sbjct 38304453 CACGCCAAGCGCAAAACTGTCACCGCAATGGACGTGGTCTACGCGCTTAAGCGCCAGGGA 38304512 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| |||| || || || ||||| Sbjct 38304513 CGTACCCTTTACGGCTTCGGCGGTTAA 38304539 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||| ||||| || || Sbjct 39227393 CGCAAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACAAAGCCGGCCAT 39227452 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| ||||| ||||| |||| || | |||| || |||| Sbjct 39227453 CCGCCGCCTGGCCCGCCGTGGAGGAGTTAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 39227512 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 39227513 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 39227572 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || ||||| || Sbjct 39227573 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGTCAGGG 39227632 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | ||||| ||||| ||||| Sbjct 39227633 CCGCACTCTCTATGGATTTGGTGGTTAA 39227660 Score = 154 bits (170), Expect = 2e-33 Identities = 180/243 (74%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | ||||| ||||||||||| || || || ||||| || || Sbjct 38345954 CGCCAAGCGCCACCGCAAAGTCCTTCGTGATAACATCCAGGGCATTACAAAGCCTGCCAT 38346013 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || ||||||||||| ||||| || ||||| ||||||| | |||| || |||| Sbjct 38346014 TCGGCGCCTGGCTCGTCGCGGTGGTGTGAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 38346073 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 38346074 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 38346133 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| ||||||| | ||||| || | || || || || Sbjct 38346134 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 38346193 Query 16672 CCG 16674 || Sbjct 38346194 ACG 38346196 Score = 145 bits (160), Expect = 1e-30 Identities = 178/243 (73%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || ||||| | ||| || ||||| ||||| || || || || || ||||| Sbjct 39232653 CGCTAAACGCCATCGTAAGGTTCTGCGGGATAATATCCAGGGTATTACGAAACCGGCTAT 39232594 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||||||||| || || || ||||| | ||||| | |||| || |||| Sbjct 39232593 TCGCCGTTTGGCTCGTCGGGGGGGTGTGAAGCGCATTTCTGGGCTCATCTACGAGGAGAC 39232534 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| || ||| ||| |||| || || || ||| ||||| Sbjct 39232533 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGAGACGCGGTCACCTACACCGA 39232474 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| || |||||||||||| |||||||| | ||||| || | || ||||| || Sbjct 39232473 GCACGCTAAGCGCAAGACTGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGTCAGGG 39232414 Query 16672 CCG 16674 || Sbjct 39232413 ACG 39232411 >seq20 Length=149338601 Score = 138 bits (152), Expect = 2e-28 Identities = 195/274 (71%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| | || |||||||||||||||| || |||||||| || || Sbjct 24297726 CGCCAAGCGTCATCGCAAAGTCCTGAGAGATAACATCCAAGGTATTACCAAGCCCGCCAT 24297667 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||||| ||||| |||||||| || | || || | | || || |||| Sbjct 24297666 TCGGCGCCTAGCTCGGCGTGGGGGAGTCAAACGCATTTCCGGCCTCATTTACGAGGAGAC 24297607 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | || || ||| |||||| | || || || ||| || || Sbjct 24297606 CCGAGGCGTGTTGAAGGTGTTTCTGGAGAACGTTATTCGGGACGCCGTCACCTACACGGA 24297547 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 24297546 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTAAAGCGGCAGGG 24297487 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | | ||||| || ||| ||| | || || Sbjct 24297486 ACGCACCCTGTATGGCTTCGGAGGTTGAGCTGCT 24297453 >seq22 Length=63924421 Score = 129 bits (142), Expect = 9e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATC-GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||||| | || ||| | || || |||||||| || || || ||||| || || Sbjct 30896325 GCCAAGCGTCATCGGAAGGTCT-TACGGGACAACATCCAGGGCATTACGAAGCCCGCAAT 30896267 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || |||||||| |||||||| |||| || | |||| || |||| Sbjct 30896266 TCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGCATCTCAGGGCTCATCTACGAGGAGAC 30896207 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | || ||||| | | | || |||| ||||| | || || || Sbjct 30896206 CCGTGGAGTGCTCAAAGTCTTCTTGGAAAATGTGATCCGCGATGCAGTGACATACACGGA 30896147 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || ||||| ||||||| || || Sbjct 30896146 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTGTATGCTCTGAAACGCCAGGG 30896087 Query 16672 CCG 16674 ||| Sbjct 30896086 CCG 30896084 >seq9 Length=141945777 Score = 113 bits (124), Expect = 7e-21 Identities = 189/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || ||| ||| | || ||||| || || |||| ||||| ||| | Sbjct 86953490 CGCTAAGCACCACTGCAAGGTTCTGTGCGACAACATTCAGGGCATCAT-AAGCCTGCTCT 86953432 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| |||||||||||| || ||||| ||||||| |||||| |||| Sbjct 86953431 TCGCCGCCTGGATCGTCGTGGTGGGGTGAAGCGCATCTCTGGG-----CTATGAGGAGAC 86953377 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||| | || || ||| ||| |||| || || || | | ||||| Sbjct 86953376 CCGCGGGGTCCTGAAAGTGTTTCTGGAGAACGTGATCCTGGACGCGGTCACCAACACCGA 86953317 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || |||||||||||| |||| || | ||||| || | || || || || Sbjct 86953316 GCACGCCAAGCGGAAGACTGTCACCGCCATCGACGTGGTCTACGCTCTCAAGCGCCAGGG 86953257 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||||| | || |||| || ||||| ||| Sbjct 86953256 CCGTACCCTCTACAGTTTCGGCCGTTAAGCTT 86953225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064704669947