Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq7 183 5e-42
seq20 138 2e-28
seq22 129 9e-26
seq9 113 7e-21
>seq7
Length=66841537
Score = 183 bits (202), Expect = 5e-42
Identities = 197/261 (75%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||| |||| |||||| ||||||||||| || ||||||||||| || ||
Sbjct 39194720 CGCTAAGCGTCACCGCAAGGTTCTTCGCGATAACATCCAGGGCATCACCAAGCCTGCCAT 39194779
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|||||||||||| || ||||| ||||| ||||| | ||||| | ||||||| ||||
Sbjct 39194780 CCGTCGTCTGGCCCGGCGTGGAGGAGTTAAGCGCATTTCTGGCCTCATCTATGAGGAGAC 39194839
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||||| | ||||| | | ||| |||| ||||| || || |||||
Sbjct 39194840 CCGCGGGGTGTTGAAGGTGTTCCTGGAAAACGTGATCCGCGATGCGGTCACTTACACCGA 39194899
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||| || || || || ||||||||| | |||||| | ||||| || ||||||| || ||
Sbjct 39194900 GCATGCCAAGCGCAAAACTGTCACCGCTATGGATGTGGTCTACGCGCTGAAACGCCAGGG 39194959
Query 16672 CCGTAAGATTTATGGTTTTGG 16692
||| | | || || |||||
Sbjct 39194960 CCGCACCCTCTACGGCTTTGG 39194980
Score = 181 bits (200), Expect = 2e-41
Identities = 199/262 (76%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||||||||| ||||||| | |||| || || || ||||| || || || ||||||||||
Sbjct 39382556 CGCTAAGCGCCATCGCAAAG-TCTTGCGGGACAATATCCAGGGTATTACTAAGCCAGCTA 39382498
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| ||||| ||||| |||||||| ||||| ||| |||| || | |||| |||||||
Sbjct 39382497 TCCGGCGTCTTGCTCGGCGTGGTGGGGTCAAACGTATCTCCGGTCTTATCTACGAAGAGA 39382438
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
||||| || |||| | || || | | || |||| ||| || || ||| || |
Sbjct 39382437 CTCGTGGGGTGCTGAAAGTGTTTCTGGAAAATGTGATCCGTGACGCGGTCACCTACACGG 39382378
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || |||||||| ||| ||||||| ||||||| || | |||||||| |
Sbjct 39382377 AGCACGCCAAGCGCAAGACTGTTACCGCCATGGACGTCGTCTACGCGCTCAAACGTCAGG 39382318
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||||| |||| ||||||||
Sbjct 39382317 GCCGTACTCTTTACGGTTTTGG 39382296
Score = 176 bits (194), Expect = 7e-40
Identities = 202/272 (74%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||||||||| || || | ||| || || |||||||| || ||||| ||||| |||||
Sbjct 39461812 CGCTAAGCGCCACCGTAAGGTTCTGCGCGACAACATCCAGGGCATCACTAAGCCTGCTAT 39461753
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || |||||||||||||| || || ||||| ||||||| | |||| |||||||
Sbjct 39461752 CCGCCGCCTGGCTCGTCGTGGCGGTGTGAAGCGCATCTCTGGTCTCATCTACGAAGAGAC 39461693
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||| | || || ||| ||| |||| ||||| || ||| |||||
Sbjct 39461692 CCGCGGCGTCCTGAAAGTGTTTCTGGAGAACGTGATCCGGGATGCAGTCACCTACACCGA 39461633
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|| || || || |||||||||||| | |||||| | |||||||| | || || || ||
Sbjct 39461632 ACATGCCAAGCGGAAGACTGTCACCGCTATGGATGTGGTCTATGCTCTCAAGCGCCAGGG 39461573
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
||||| | ||||||||||| ||||| |||
Sbjct 39461572 CCGTACTCTCTATGGTTTTGGTGGTTAACCTT 39461541
Score = 161 bits (178), Expect = 2e-35
Identities = 196/267 (73%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||| || |||| ||| || || || ||||| || ||||||||||| |||||
Sbjct 38304273 GCTAAGCGCCACCGCAAGGTTCTGCGCGACAATATCCAGGGCATCACCAAGCCCGCTATT 38304332
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||||||||||||||||||||| || ||||| |||| || | |||||||||||| |
Sbjct 38304333 CGTCGTCTGGCTCGTCGTGGTGGTGTAAAGCGAATCTCCGGTCTTATCTATGAAGAGACT 38304392
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| || ||||| | || || | | || || | || ||| || ||| || |||
Sbjct 38304393 CGTGGGGTGCTGAAGGTGTTTCTGGAAAATGTGATACGGGACGCTGTCACCTACACTGAG 38304452
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
||||| || || || ||||||||| | ||||| | ||||| || | || || || ||
Sbjct 38304453 CACGCCAAGCGCAAAACTGTCACCGCAATGGACGTGGTCTACGCGCTTAAGCGCCAGGGA 38304512
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
|||| |||| || || || |||||
Sbjct 38304513 CGTACCCTTTACGGCTTCGGCGGTTAA 38304539
Score = 159 bits (176), Expect = 5e-35
Identities = 196/268 (73%), Gaps = 0/268 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| ||| || || |||||||| || ||||| ||||| || ||
Sbjct 39227393 CGCAAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACAAAGCCGGCCAT 39227452
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
||| || ||||| || ||||| ||||| ||||| |||| || | |||| || ||||
Sbjct 39227453 CCGCCGCCTGGCCCGCCGTGGAGGAGTTAAGCGCATCTCCGGCCTTATCTACGAGGAGAC 39227512
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| |||| || ||| ||| |||| || || || ||| |||||
Sbjct 39227513 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 39227572
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||||||| ||||||| | ||||| || | || ||||| ||
Sbjct 39227573 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGTCAGGG 39227632
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699
||| | | ||||| ||||| |||||
Sbjct 39227633 CCGCACTCTCTATGGATTTGGTGGTTAA 39227660
Score = 154 bits (170), Expect = 2e-33
Identities = 180/243 (74%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||| || |||| | ||||| ||||||||||| || || || ||||| || ||
Sbjct 38345954 CGCCAAGCGCCACCGCAAAGTCCTTCGTGATAACATCCAGGGCATTACAAAGCCTGCCAT 38346013
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || ||||||||||| ||||| || ||||| ||||||| | |||| || ||||
Sbjct 38346014 TCGGCGCCTGGCTCGTCGCGGTGGTGTGAAGCGCATCTCTGGGCTCATCTACGAGGAGAC 38346073
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||| | || ||||| | ||||| ||| ||| |||| || || || ||| |||||
Sbjct 38346074 TCGCGGGGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGGGACGCGGTCACCTACACCGA 38346133
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||||||| ||||||| | ||||| || | || || || ||
Sbjct 38346134 GCACGCCAAGCGCAAGACTGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 38346193
Query 16672 CCG 16674
||
Sbjct 38346194 ACG 38346196
Score = 145 bits (160), Expect = 1e-30
Identities = 178/243 (73%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||| || ||||| | ||| || ||||| ||||| || || || || || |||||
Sbjct 39232653 CGCTAAACGCCATCGTAAGGTTCTGCGGGATAATATCCAGGGTATTACGAAACCGGCTAT 39232594
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| ||| |||||||||| || || || ||||| | ||||| | |||| || ||||
Sbjct 39232593 TCGCCGTTTGGCTCGTCGGGGGGGTGTGAAGCGCATTTCTGGGCTCATCTACGAGGAGAC 39232534
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || ||||| |||| || ||| ||| |||| || || || ||| |||||
Sbjct 39232533 CCGCGGGGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGAGACGCGGTCACCTACACCGA 39232474
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
||||||||| || |||||||||||| |||||||| | ||||| || | || ||||| ||
Sbjct 39232473 GCACGCTAAGCGCAAGACTGTCACCGCCATGGATGTGGTCTACGCGCTCAAGCGTCAGGG 39232414
Query 16672 CCG 16674
||
Sbjct 39232413 ACG 39232411
>seq20
Length=149338601
Score = 138 bits (152), Expect = 2e-28
Identities = 195/274 (71%), Gaps = 0/274 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | || |||||||||||||||| || |||||||| || ||
Sbjct 24297726 CGCCAAGCGTCATCGCAAAGTCCTGAGAGATAACATCCAAGGTATTACCAAGCCCGCCAT 24297667
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || || ||||| ||||| |||||||| || | || || | | || || ||||
Sbjct 24297666 TCGGCGCCTAGCTCGGCGTGGGGGAGTCAAACGCATTTCCGGCCTCATTTACGAGGAGAC 24297607
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||||| | || || ||| |||||| | || || || ||| || ||
Sbjct 24297606 CCGAGGCGTGTTGAAGGTGTTTCTGGAGAACGTTATTCGGGACGCCGTCACCTACACGGA 24297547
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| ||||||| | ||||| || | || || || ||
Sbjct 24297546 GCACGCCAAGCGCAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTAAAGCGGCAGGG 24297487
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705
|| | | ||||| || ||| ||| | || ||
Sbjct 24297486 ACGCACCCTGTATGGCTTCGGAGGTTGAGCTGCT 24297453
>seq22
Length=63924421
Score = 129 bits (142), Expect = 9e-26
Identities = 176/243 (72%), Gaps = 2/243 (1%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATC-GCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||||| | || ||| | || || |||||||| || || || ||||| || ||
Sbjct 30896325 GCCAAGCGTCATCGGAAGGTCT-TACGGGACAACATCCAGGGCATTACGAAGCCCGCAAT 30896267
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| |||||||| || |||||||| |||||||| |||| || | |||| || ||||
Sbjct 30896266 TCGCCGTCTGGCCCGCCGTGGTGGTGTCAAGCGCATCTCAGGGCTCATCTACGAGGAGAC 30896207
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|||| || | || ||||| | | | || |||| ||||| | || || ||
Sbjct 30896206 CCGTGGAGTGCTCAAAGTCTTCTTGGAAAATGTGATCCGCGATGCAGTGACATACACGGA 30896147
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || ||||| ||||| |||||||| | || ||||| ||||||| || ||
Sbjct 30896146 GCACGCCAAGCGCAAGACGGTCACGGCCATGGATGTGGTGTATGCTCTGAAACGCCAGGG 30896087
Query 16672 CCG 16674
|||
Sbjct 30896086 CCG 30896084
>seq9
Length=141945777
Score = 113 bits (124), Expect = 7e-21
Identities = 189/272 (69%), Gaps = 6/272 (2%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||| || ||| ||| | || ||||| || || |||| ||||| ||| |
Sbjct 86953490 CGCTAAGCACCACTGCAAGGTTCTGTGCGACAACATTCAGGGCATCAT-AAGCCTGCTCT 86953432
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| |||||||||||| || ||||| ||||||| |||||| ||||
Sbjct 86953431 TCGCCGCCTGGATCGTCGTGGTGGGGTGAAGCGCATCTCTGGG-----CTATGAGGAGAC 86953377
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
|| | || |||| | || || ||| ||| |||| || || || | | |||||
Sbjct 86953376 CCGCGGGGTCCTGAAAGTGTTTCTGGAGAACGTGATCCTGGACGCGGTCACCAACACCGA 86953317
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||| || || |||||||||||| |||| || | ||||| || | || || || ||
Sbjct 86953316 GCACGCCAAGCGGAAGACTGTCACCGCCATCGACGTGGTCTACGCTCTCAAGCGCCAGGG 86953257
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
||||| | || |||| || ||||| |||
Sbjct 86953256 CCGTACCCTCTACAGTTTCGGCCGTTAAGCTT 86953225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79064704669947
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