Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq22 143 3e-29 seq21 96.9 4e-15 seq11 82.4 8e-11 >seq22 Length=63924421 Score = 143 bits (158), Expect = 3e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || |||||||||| | ||||||| || |||| ||||||||| ||||| | Sbjct 24611845 AGCTCCTCCTCCGTTTCAAACTGAACAAGAACAGCCCCCAGTGAAGTACAGAATGTCTGA 24611786 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | ||||||||||| ||||| ||||| ||||| ||||| || ||||| |||||||||||| Sbjct 24611785 CTGAATGTCCAATTCTTTGAGTCTTCCGAAAAATAAAAACACTTATACCCAAATCCAATC 24611726 Query 130773 CATCCCTTTGGGCAAGTAACATAT 130796 ||||| ||||||||||| |||||| Sbjct 24611725 CATCCTTTTGGGCAAGTGACATAT 24611702 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130412 TGAATTATTAGAAGGTATATAGATATTAGTATATGTTTTACTACAAATCCATTTTCTATT 130471 |||| || | | ||||| ||| |||| ||| ||| || || ||||||||||||||||| Sbjct 24614148 TGAAGTACTTAAGGGTATGGAGACATTACTATTTGTCTTGCTGCAAATCCATTTTCTATT 24614089 Query 130472 CGCATAAACTCTGGAGCTACTAATTCTGATGTCATTAAGATATGCACATTCTCCAGTTCC 130531 || || || ||||| ||||||||||| | | ||| || || |||||||| |||||||| Sbjct 24614088 TGCGTATACCCTGGAACTACTAATTCTAACATTATTCAGGTAGGCACATTCCCCAGTTCC 24614029 Query 130532 TGTAATAACAAAT 130544 ||| || |||||| Sbjct 24614028 TGTGATGACAAAT 24614016 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 130653 AGTTCTTCTTCCGTTTCAACTTTAACAAGAGTTGCTCCCAATGAAGTACAAAATGTGTTG 130712 || || || |||||||||| | | ||||| ||| | ||||||||||||||| | Sbjct 24952473 AGCTCCTCCTCCGTTTCAAACTGAGCAAGAACAGCTTCTTCTGAAGTACAAAATGTCTGA 24952532 Query 130713 CCAAATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATC 130772 | |||||||| || ||| || || ||||| ||||| ||||| ||||||||| ||| Sbjct 24952533 CTGAATGTCCAGTTCCTTGTCTCATCCGAAAAATAAAAACATTTTCTTCCAAATCCTATC 24952592 Query 130773 CATCCCTTTGGGCAAGTAACATA 130795 ||||| |||| ||| | |||||| Sbjct 24952593 CATCCTTTTGAGCAGGGAACATA 24952615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 130551 TTATAATTTGAATTATCTGCCCATTTCCAAGGATGATTTGAAGATTCTCTGTTAAGTCCG 130610 ||||| | || || |||| ||| ||||||||||||| ||| ||||||||| |||| || Sbjct 24612547 TTATATGTAGAGTTGTCTGTCCACTTCCAAGGATGATGTGATGATTCTCTGCTAAGGCCA 24612488 Query 130611 ATCCAATGATCTGAAGAATCTTTATATCTTTTTAAAAAATT 130651 |||||||| || ||| ||||| |||||||| | ||| || Sbjct 24612487 ATCCAATGGTCAAAAGGGTCTTTGTATCTTTTGAGAAAGTT 24612447 >seq21 Length=107358006 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| |||||||| | ||| ||||||||| ||| || ||||| | | | Sbjct 81533767 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 81533708 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| ||| || || |||||||| || || || || || || || Sbjct 81533707 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 81533648 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAA 21276 ||||||||||||| |||||||| | || ||| Sbjct 81533647 CCATAAAATCAAAGGGATTTTCTGCTTGAAA 81533617 >seq11 Length=140388259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 21168 ttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTC 21227 ||||||| | |||||| | ||||| || | ||||| || || || || || ||||| | Sbjct 25932028 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 25931969 Query 21228 CTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 | |||| ||| ||| ||||||||| |||||||||||||| Sbjct 25931968 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTC 25931929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531824478883960