Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 4e-13 seq503 84.2 6e-11 >seq1 Length=104504130 Score = 91.5 bits (100), Expect = 4e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || || |||| |||||||| || || || ||| Sbjct 62754167 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCATACATG 62754108 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | ||||||||||| || || || ||| |||||||||| || | || || || | Sbjct 62754107 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 62754048 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||| || || || || | || || ||| Sbjct 62754047 AGCAACCTGTGCACAGAAATAGTGGAGTATACC 62754015 >seq503 Length=25129 Score = 84.2 bits (92), Expect = 6e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111663 TTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG 111722 |||| |||||||||||||||||||| ||| | ||| |||||||||||| || ||| Sbjct 16637 TTGGCTAAAATGGCACTTCCACCATGCCATTTGTTGTTCCAGTTTTATGTTGGTGATGGG 16578 Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782 | | | ||||| ||| | || |||| |||||| || || || || || |||||| Sbjct 16577 AAGTTGTCATGTATGATGCACCAAAGATCATGTGATATGGGACTAGGAGTACCATTTAAT 16518 Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 |||||| ||| || | || || | | || |||||| Sbjct 16517 ATTGCATCATACTCATTGCTGACGTATATGATTGCTCAT 16479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303161909676578