Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 4e-13
seq503 84.2 6e-11
>seq1
Length=104504130
Score = 91.5 bits (100), Expect = 4e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || || |||| |||||||| || || || |||
Sbjct 62754167 GCTCAGCAGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCATACATG 62754108
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230
| ||||||||||| || || || ||| |||||||||| || | || || || |
Sbjct 62754107 CTCTACAAAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACTTGGGAACCATCAAATGC 62754048
Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263
|||||||| || || || || | || || |||
Sbjct 62754047 AGCAACCTGTGCACAGAAATAGTGGAGTATACC 62754015
>seq503
Length=25129
Score = 84.2 bits (92), Expect = 6e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 111663 TTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGG 111722
|||| |||||||||||||||||||| ||| | ||| |||||||||||| || |||
Sbjct 16637 TTGGCTAAAATGGCACTTCCACCATGCCATTTGTTGTTCCAGTTTTATGTTGGTGATGGG 16578
Query 111723 ATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAAT 111782
| | | ||||| ||| | || |||| |||||| || || || || || ||||||
Sbjct 16577 AAGTTGTCATGTATGATGCACCAAAGATCATGTGATATGGGACTAGGAGTACCATTTAAT 16518
Query 111783 ATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821
|||||| ||| || | || || | | || ||||||
Sbjct 16517 ATTGCATCATACTCATTGCTGACGTATATGATTGCTCAT 16479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303161909676578
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |