Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq13 102 7e-17
>seq13
Length=89791019
Score = 102 bits (112), Expect = 7e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | || |||| ||||| |||||||| || || || |||||||| | |
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | | ||||||| ||||||||||| | || || ||||| ||||| ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || ||| || || | | | ||||| | ||||||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCGA 87684595
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 87684594 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405031328062210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |