Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq24 118 7e-22 seq20 91.5 1e-13 seq33 84.2 1e-11 >seq24 Length=78163535 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 37509920 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 37509979 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 37509980 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 37510014 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||||| |||||||||||| ||||| ||||||||| || | | || Sbjct 22107635 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 22107694 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || || | || | ||||| || || Sbjct 22107695 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 22107754 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| ||| || || | || || || Sbjct 22107755 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 22107814 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||||| ||| |||||||| || ||||| Sbjct 22107815 CTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847 >seq20 Length=149338601 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||||||||||||||| |||||||| ||| | || |||||| | Sbjct 114507413 AAGCCCATTCCTTTGGCTGTGGTTTCGAGGGATAGTAGGTAGAGACAGTGGGAATCTCTT 114507472 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||| ||||||||||||||||| Sbjct 114507473 TGATCCATTCATGCGAGTCACTAATTAGATGAC 114507505 >seq33 Length=121428352 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCC-TCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||| |||||||||||||||||||||||||| | ||||||| |||| | |||||||||| Sbjct 57596049 CTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTAACGGTACCTGTTGACCATCGGTCTCG 57596108 Query 20006 CGGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 57596109 TGCCGGTATTTAGCCTTA 57596126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334900340782049