Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq23 120 3e-22
seq13 109 5e-19
>seq23
Length=109465363
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| || || ||||| ||||||| || ||||||| | || |||||| |
Sbjct 83252357 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 83252416
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||| |||||| ||||| || ||| || || ||||| ||||| ||||||||
Sbjct 83252417 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 83252476
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || |||||||||||||| | ||||||| ||||| | ||||||||
Sbjct 83252477 GCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAA 83252536
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
|| || ||||| || || || ||
Sbjct 83252537 CATCCAGAAAGAGTCGACCCTGCA 83252560
>seq13
Length=89791019
Score = 109 bits (120), Expect = 5e-19
Identities = 155/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| | || || ||| | |
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
||||| || ||| | || |||| |||| || ||||| || || || |||||||||
Sbjct 87684606 GACACCATTGAG--AATGTCAAAGCCAAAATCCAA-GACAAGGAGGGCATCCCACCTGAC 87684662
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || || |||||||| | || |||| |||||| || || |||
Sbjct 87684663 CAGCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTAC 87684722
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || ||||| ||||| || || || |||||
Sbjct 87684723 AATATCCAGAAAGAGTCCACCCTGCACTTGGTGCT 87684757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433267377277385
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |