Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq13 129 5e-25
seq23 98.7 8e-16
seq24 96.9 3e-15
seq8 84.2 2e-11
>seq13
Length=89791019
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || || | || || || || |||| ||||| || || |||
Sbjct 87684544 AGATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCA 87684603
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| ||| | || || ||||| ||||| |||||||||||||| || ||||| || |
Sbjct 87684604 GTGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACC 87684663
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| || || || ||||||||| | |||||| |||||| | || || ||||
Sbjct 87684664 AGCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACA 87684723
Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
| || || ||||| |||||| | || || || | || |||| || ||
Sbjct 87684724 ATATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGG 87684772
>seq23
Length=109465363
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272
|| || |||||||| || || || || | ||||| || || ||||||| || |||||
Sbjct 83252352 GTCAAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAG 83252411
Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332
||| || ||| | || | | || || || || || ||||| || ||||| ||
Sbjct 83252412 CCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCT 83252471
Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392
|| || || | || || ||||||||||||||| | || ||| | |||| | || |||
Sbjct 83252472 GACCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGAT 83252531
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
|||||||| || ||||| || |||
Sbjct 83252532 TACAACATCCAGAAAGAGTCGACC 83252555
>seq24
Length=78163535
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || | || || || || ||||||| || || ||| || |
Sbjct 22107847 ATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 22107788
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
||||| | || || | || || || || || ||||| || ||||| || || ||
Sbjct 22107787 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 22107728
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||| | || || ||||| ||||| || | || ||| | || | || || ||||||
Sbjct 22107727 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 22107668
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| || ||||| | ||| |||| ||| || | || || |||
Sbjct 22107667 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGT 22107620
>seq8
Length=55920303
Score = 84.2 bits (92), Expect = 2e-11
Identities = 142/204 (70%), Gaps = 4/204 (2%)
Strand=Plus/Minus
Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274
||||||||| || | ||| || || | | || || || | || ||||| || || |
Sbjct 51506980 AAAGATGCAGATCTCTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCC 51506921
Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334
|| || ||| || || ||||| ||||| |||||||||||||| || || || ||
Sbjct 51506920 CAGTGACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGA 51506861
Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTT--AGAGGATCACCGCACCGTCTCCGAT 22392
|||| |||||| || || | |||| |||| | ||| | | ||| ||| || ||
Sbjct 51506860 CCAACCACGTCTAATTTTCGTGGGCACACAGCTGGAGAAGGGCTGCGCTCCG--TCAGAC 51506803
Query 22393 TACAACATTCAAAAAGAATCCACC 22416
||||| || || ||||| ||||||
Sbjct 51506802 TACAATATCCAGAAAGAGTCCACC 51506779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419669279921635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |