Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq1512 95.1 2e-14
seq9 93.3 9e-14
seq10 91.5 3e-13
seq20 89.7 1e-12
seq7 89.7 1e-12
seq428 87.8 4e-12
seq420 87.8 4e-12
>seq1512
Length=7241
Score = 95.1 bits (104), Expect = 2e-14
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||
Sbjct 6743 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 6802
Query 142112 CCCCGCCAGAGA 142123
|||| ||||||
Sbjct 6803 TCCCGGCAGAGA 6814
>seq9
Length=141945777
Score = 93.3 bits (102), Expect = 9e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561
|||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 52481973 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 52481914
Query 142562 GCCCCACATCGGGC 142575
||||||| | ||||
Sbjct 52481913 GCCCCACGTTGGGC 52481900
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 52450971 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 52451030
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 52451031 CCCACGTTGGGC 52451042
>seq10
Length=55943575
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3601120 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3601061
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 3601060 CCCCACGTTGGGC 3601048
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3605707 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3605648
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3605647 CCCACGTTGGGC 3605636
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3647699 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3647758
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3647759 CCCACGTTGGGC 3647770
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3651872 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3651931
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3651932 CCCACGTTGGGC 3651943
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3659570 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3659629
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3659630 CCCACGTTGGGC 3659641
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3664358 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3664417
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 3664418 CCCACGTTGGGC 3664429
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3628034 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3628093
Query 142563 CCCCAC 142568
||||||
Sbjct 3628094 CCCCAC 3628099
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 3637530 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3637471
Query 142563 CCCCAC 142568
||||||
Sbjct 3637470 CCCCAC 3637465
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 3666115 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3666174
Query 142564 CCCAC 142568
|||||
Sbjct 3666175 CCCAC 3666179
>seq20
Length=149338601
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 24793993 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 24793934
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 24793933 CCCACGTTGGGC 24793922
>seq7
Length=66841537
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 39011872 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 39011813
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 39011812 CCCACGTTGGGC 39011801
>seq428
Length=45859
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/65 (91%), Gaps = 1/65 (2%)
Strand=Plus/Plus
Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113
||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 9722 CTCCGTGGCGCAATTGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGTGGGTTCGAATC 9781
Query 142114 CCGCC 142118
|||||
Sbjct 9782 CCGCC 9786
>seq420
Length=32250
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/65 (91%), Gaps = 1/65 (2%)
Strand=Plus/Minus
Query 142055 CTCTGTGGCGCAAT-GGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACCC 142113
||| |||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 22562 CTCCGTGGCGCAATTGGATAGCGCGTTGGACTTCTAATCCAAAGGTTGTGGGTTCGAATC 22503
Query 142114 CCGCC 142118
|||||
Sbjct 22502 CCGCC 22498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027685631223839
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |