Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq23 168 1e-36 seq13 149 1e-30 seq5 134 3e-26 seq4 116 7e-21 seq33 102 2e-16 seq8 96.9 6e-15 seq12 91.5 3e-13 >seq23 Length=109465363 Score = 168 bits (186), Expect = 1e-36 Identities = 165/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| || ||||| || ||||| || || ||||| || |||||||||||||| || || Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||| ||| |||||||||||| | || || |||| |||||||| || Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 83252387 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || || |||||||| ||||| || |||||| || Sbjct 83252386 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 83252354 >seq13 Length=89791019 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||||||||| ||||| || || || || Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||| || || ||||| || || | || ||||| ||||| Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||| || || || ||||| ||| |||||||| | || || Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || || |||||||| Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq5 Length=178027732 Score = 134 bits (148), Expect = 3e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || || |||||||| |||||||| ||||| || || || | |||||||| Sbjct 139076906 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 139076965 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || || ||||| || |||||||||||||| || || Sbjct 139076966 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 139077025 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| ||||| ||| |||||||||||| Sbjct 139077026 ATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||||||| || ||||||||||| |||||||| || || || Sbjct 29064669 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 29064728 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || || | ||||||||| | ||| |||||||| || || | || || ||||| Sbjct 29064729 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781 >seq4 Length=81198604 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || ||||||||||| |||||||| || || || || || | ||||||| Sbjct 5807552 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCC 5807493 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | ||| ||||| || || || | || || |||| || | |||| || ||| Sbjct 5807492 AGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCTC------TTGG 5807439 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| |||||| | |||||||||||| | || || |||| ||||||||| || Sbjct 5807438 ATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5807379 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || | |||||| ||||| |||||||| Sbjct 5807378 CCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 >seq33 Length=121428352 Score = 102 bits (112), Expect = 2e-16 Identities = 154/214 (72%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| | || ||||||| |||||||| | || ||| || || |||||||| Sbjct 51188291 ACCAAGTGCACGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTTCC 51188350 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 |||||||| || || | |||||||| || ||||| || ||| |||||||||| | || Sbjct 51188351 AACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCAGGGGGA-TGCCTTCCTTACCCTGT 51188409 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTT 68431 | ||| ||||| || || |||| |||| ||| | || || |||| ||| ||| | || Sbjct 51188410 ACCTTGGCCTTCACATTCTTGATGATGTC-ACTGCACTCCACCTCCAGGGTAATGATCTT 51188468 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | || || || || || |||||| || Sbjct 51188469 GCTGGTCA--GTTTTCACAAAGATTTGCATTTTG 51188500 >seq8 Length=55920303 Score = 96.9 bits (106), Expect = 6e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTT 68310 |||| | | || ||||||||||| ||||| || || || || ||| | | ||| || | Sbjct 51506768 ACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCG-CAGCCCTTC-T 51506825 Query 68311 CTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370 | | ||| | || |||| || || | | ||||||| || || ||||| |||||||||| Sbjct 51506826 CCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCTT 51506885 Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430 | || || || ||||| ||| ||||||| | || || || | ||| ||||| | Sbjct 51506886 GGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCT 51506945 Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||| | |||||||| || | |||||||| Sbjct 51506946 TGCCCATCAGGGTCTTCACAGAGATCTGCAT 51506976 >seq12 Length=127780087 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| | ||| || | || || ||||||| ||||| ||| | || || || Sbjct 13420461 CCACCACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCAAAG 13420402 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| |||||| | ||||| || || || || |||||||||||| | || ||| Sbjct 13420401 TATGTCC----ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGA 13420346 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || | |||||| | || ||||| ||||| || || || || || | | | || Sbjct 13420345 ATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACC 13420286 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | |||||||| || || | |||||||| || || ||||||| Sbjct 13420285 TCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921490158705880