Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq23 168 1e-36
seq13 149 1e-30
seq5 134 3e-26
seq4 116 7e-21
seq33 102 2e-16
seq8 96.9 6e-15
seq12 91.5 3e-13
>seq23
Length=109465363
Score = 168 bits (186), Expect = 1e-36
Identities = 165/213 (77%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| ||||| || || || | ||||||||
Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| || ||||| || ||||| || || ||||| || |||||||||||||| || ||
Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| ||||| ||| |||||||||||| | || || |||| |||||||| ||
Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 83252387
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| || |||||||| ||||| || |||||| ||
Sbjct 83252386 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 83252354
>seq13
Length=89791019
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || ||||||||||| ||||| || || || ||
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||| || || ||||| || || | || ||||| |||||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||| || || || ||||| ||| |||||||| | || ||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || ||||| |||||||| || || ||||||||
Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq5
Length=178027732
Score = 134 bits (148), Expect = 3e-26
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || || |||||||| |||||||| ||||| || || || | ||||||||
Sbjct 139076906 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 139076965
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| || || || ||||| || || ||||| || |||||||||||||| || ||
Sbjct 139076966 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 139077025
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTC 68401
||||| ||||| ||| ||||||||||||
Sbjct 139077026 ATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054
Score = 87.8 bits (96), Expect = 3e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | ||||| |||||||| || ||||||||||| |||||||| || || ||
Sbjct 29064669 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 29064728
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| || | ||||||||| | ||| |||||||| || || | || || |||||
Sbjct 29064729 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781
>seq4
Length=81198604
Score = 116 bits (128), Expect = 7e-21
Identities = 151/209 (72%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| || ||||||||||| |||||||| || || || || || | |||||||
Sbjct 5807552 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCC 5807493
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| ||| ||||| || || || | || || |||| || | |||| || |||
Sbjct 5807492 AGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCTC------TTGG 5807439
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
||||| |||||| | |||||||||||| | || || |||| ||||||||| ||
Sbjct 5807438 ATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTA 5807379
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| || | |||||| ||||| ||||||||
Sbjct 5807378 CCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350
>seq33
Length=121428352
Score = 102 bits (112), Expect = 2e-16
Identities = 154/214 (72%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||||||| | || ||||||| |||||||| | || ||| || || ||||||||
Sbjct 51188291 ACCAAGTGCACGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTTCC 51188350
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
|||||||| || || | |||||||| || ||||| || ||| |||||||||| | ||
Sbjct 51188351 AACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCAGGGGGA-TGCCTTCCTTACCCTGT 51188409
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTT 68431
| ||| ||||| || || |||| |||| ||| | || || |||| ||| ||| | ||
Sbjct 51188410 ACCTTGGCCTTCACATTCTTGATGATGTC-ACTGCACTCCACCTCCAGGGTAATGATCTT 51188468
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
| || | || || || || || |||||| ||
Sbjct 51188469 GCTGGTCA--GTTTTCACAAAGATTTGCATTTTG 51188500
>seq8
Length=55920303
Score = 96.9 bits (106), Expect = 6e-15
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTT 68310
|||| | | || ||||||||||| ||||| || || || || ||| | | ||| || |
Sbjct 51506768 ACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCG-CAGCCCTTC-T 51506825
Query 68311 CTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTT 68370
| | ||| | || |||| || || | | ||||||| || || ||||| ||||||||||
Sbjct 51506826 CCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCTT 51506885
Query 68371 GAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430
| || || || ||||| ||| ||||||| | || || || | ||| ||||| |
Sbjct 51506886 GGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCT 51506945
Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||| | |||||||| || | ||||||||
Sbjct 51506946 TGCCCATCAGGGTCTTCACAGAGATCTGCAT 51506976
>seq12
Length=127780087
Score = 91.5 bits (100), Expect = 3e-13
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || | ||| | ||| || | || || ||||||| ||||| ||| | || || ||
Sbjct 13420461 CCACCACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCAAAG 13420402
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| |||||| | ||||| || || || || |||||||||||| | || |||
Sbjct 13420401 TATGTCC----ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGA 13420346
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| | |||||| | || ||||| ||||| || || || || || | | | ||
Sbjct 13420345 ATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACC 13420286
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460
|| | |||||||| || || | |||||||| || || |||||||
Sbjct 13420285 TCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921490158705880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |