Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq24 114 1e-20
seq23 86.0 5e-12
seq5 82.4 6e-11
>seq24
Length=78163535
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| |||||||| |||| ||| | || || || |||||||||||||| ||
Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 22107679
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||||| |||||| ||||| || ||||| |||| || | || ||||| |||||
Sbjct 22107680 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 22107739
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||| ||||| || || ||||| |||| | ||| | || || | || ||||||
Sbjct 22107740 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 22107799
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | || | || || || ||||| || || || ||||| |||||
Sbjct 22107800 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847
>seq23
Length=109465363
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || ||||| || ||||||||||| | ||| | |||||| || ||||| ||
Sbjct 83252554 GTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCG 83252495
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| || ||||||||||| || || ||||| ||
Sbjct 83252494 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 83252435
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| || || |||| || | || ||||||||||| ||
Sbjct 83252434 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 83252375
Query 114366 TTTACAAAAATCTGCAT 114382
|| || || || |||||
Sbjct 83252374 TTCACGAAGATTTGCAT 83252358
>seq5
Length=178027732
Score = 82.4 bits (90), Expect = 6e-11
Identities = 154/226 (68%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 114160 CACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAG 114219
|||| |||||||| || | ||| | || || || |||||||||||||| || || ||
Sbjct 42512298 CACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAG 42512357
Query 114220 TA----CGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275
|| | |||||| ||||| || ||||| |||| || | || ||||| ||||||
Sbjct 42512358 TATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 42512417
Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335
|| ||||| || || ||||| |||| | ||| | | | || | || | |||
Sbjct 42512418 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACC 42512477
Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 114381
|| | || | || || || ||||| || | || ||||||||||
Sbjct 42512478 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420075623066148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |