Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq14 132 5e-26 >seq14 Length=103589943 Score = 132 bits (146), Expect = 5e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| ||||||||||| || ||||||||||| || | Sbjct 5433319 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5433378 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 ||||||||||||| ||||| | ||||| ||| || ||||| || || |||| || | Sbjct 5433379 TGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCATGTTAACTCGCTGGGGGAGA 5433438 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTG 10006 | ||||||||||| ||||| || ||| Sbjct 5433439 AGCTAAAGACCCTCCGGCTGCGACTG 5433464 Score = 125 bits (138), Expect = 8e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 9858 TTAAGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAG 9917 || |||| ||||| || ||||| ||| |||| ||||||||||| || ||||||||||| | Sbjct 5428429 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGG 5428370 Query 9918 TCATGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTG 9977 | |||||||||||||| ||||| | ||||| ||| || || || || || |||| | Sbjct 5428369 TGATGCCACAGGCTGAGAACCATGGGCCTGAGATCAAGGAGCACGTGAACTCGCTGGGGG 5428310 Query 9978 AAAATCTAAAGACCCTACGGCTCCGCCTG 10006 | || || |||||||| ||||| || ||| Sbjct 5428309 AGAAGCTGAAGACCCTCCGGCTGCGACTG 5428281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552637492048160