Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq24 134 3e-26
seq13 129 1e-24
seq23 113 1e-19
seq31 98.7 2e-15
seq5 96.9 8e-15
>seq24
Length=78163535
Score = 134 bits (148), Expect = 3e-26
Identities = 169/231 (73%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 22107621 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 22107680
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || | ||| ||||| | ||| || || || |||||||| | |||| | || |
Sbjct 22107681 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 22107737
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| |||||||| ||||||||||| || || || || |||||||| | ||| | |||
Sbjct 22107738 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCG 22107797
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| ||||| ||||| |||||||| ||||| ||||| ||||| || ||||||
Sbjct 22107798 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATT 22107848
>seq13
Length=89791019
Score = 129 bits (142), Expect = 1e-24
Identities = 143/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| |||||||| ||||| | || ||||| || || || | ||||| || ||||||
Sbjct 87684736 TCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAG 87684677
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | |||||| || || || || |||||||| ||||| || ||
Sbjct 87684676 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 87684617
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| || ||||| ||||| ||
Sbjct 87684616 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 87684557
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 87684556 AAGATCTGCAT 87684546
>seq23
Length=109465363
Score = 113 bits (124), Expect = 1e-19
Identities = 142/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || || || | || |||| || ||||| | ||||| || || |||
Sbjct 83252548 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAG 83252489
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | || || ||||| ||||||||||| || || ||||||||
Sbjct 83252488 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 83252429
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| |||||||| ||||| |||
Sbjct 83252428 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 83252369
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 83252368 AAGATTTGCATTTTG 83252354
>seq31
Length=75455120
Score = 98.7 bits (108), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 9/230 (4%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||| ||||| | || ||||| | ||| || ||||| || || ||| |
Sbjct 60055145 CCACCGCAAAGTCTCAACACAAGATGCAGAGTGGGCTCCTTTTGAATGTTGTAG---GTC 60055201
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363
| || | || ||||| | ||| || || || |||||||| | |||| | || |
Sbjct 60055202 AAAGTACATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 60055258
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| | |||||| ||||||||||| || || || || |||||||| | ||| | |||
Sbjct 60055259 GGAACTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCT 60055318
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||| | ||||| ||||| | ||| ||||||||
Sbjct 60055319 ACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 60055368
>seq5
Length=178027732
Score = 96.9 bits (106), Expect = 8e-15
Identities = 162/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||| | || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 42512294 CCAGCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 42512353
Query 288307 AGCGTGCGTCCGTCT----TCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGA 288359
| || ||| ||| || | ||| || || || |||||||| | |||| | ||
Sbjct 42512354 AAAGTATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGG 42512413
Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419
| || |||||||| ||||||||||| || || || || |||||||| ||| |
Sbjct 42512414 A---GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGG 42512470
Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472
| || ||||| ||||| |||||||| ||||| ||| | ||||| |||||||
Sbjct 42512471 CTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179480902697762
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |