Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq24 134 3e-26 seq13 129 1e-24 seq23 113 1e-19 seq31 98.7 2e-15 seq5 96.9 8e-15 >seq24 Length=78163535 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 22107621 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 22107680 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || | ||| ||||| | ||| || || || |||||||| | |||| | || | Sbjct 22107681 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 22107737 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||| ||||||||||| || || || || |||||||| | ||| | ||| Sbjct 22107738 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCG 22107797 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || ||||| ||||| |||||||| ||||| ||||| ||||| || |||||| Sbjct 22107798 ACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATT 22107848 >seq13 Length=89791019 Score = 129 bits (142), Expect = 1e-24 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| |||||||| ||||| | || ||||| || || || | ||||| || |||||| Sbjct 87684736 TCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAG 87684677 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || |||||||| ||||| || || Sbjct 87684676 ATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTC 87684617 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || ||||| ||||| || Sbjct 87684616 TCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 87684557 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 87684556 AAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | || |||| || ||||| | ||||| || || ||| Sbjct 83252548 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAG 83252489 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || |||||||| Sbjct 83252488 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 83252429 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| |||||||| ||||| ||| Sbjct 83252428 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 83252369 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 83252368 AAGATTTGCATTTTG 83252354 >seq31 Length=75455120 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||| ||||| | || ||||| | ||| || ||||| || || ||| | Sbjct 60055145 CCACCGCAAAGTCTCAACACAAGATGCAGAGTGGGCTCCTTTTGAATGTTGTAG---GTC 60055201 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || | || ||||| | ||| || || || |||||||| | |||| | || | Sbjct 60055202 AAAGTACATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGA--- 60055258 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || | |||||| ||||||||||| || || || || |||||||| | ||| | ||| Sbjct 60055259 GGAACTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCT 60055318 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||| | ||||| ||||| | ||| |||||||| Sbjct 60055319 ACCTCAAGAGTGATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 60055368 >seq5 Length=178027732 Score = 96.9 bits (106), Expect = 8e-15 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||| | || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 42512294 CCAGCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 42512353 Query 288307 AGCGTGCGTCCGTCT----TCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGA 288359 | || ||| ||| || | ||| || || || |||||||| | |||| | || Sbjct 42512354 AAAGTATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGG 42512413 Query 288360 ATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGA 288419 | || |||||||| ||||||||||| || || || || |||||||| ||| | Sbjct 42512414 A---GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGG 42512470 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 | || ||||| ||||| |||||||| ||||| ||| | ||||| ||||||| Sbjct 42512471 CTTGACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179480902697762