Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq23 141 9e-29
seq24 136 4e-27
seq5 100 3e-16
seq13 98.7 1e-15
>seq23
Length=109465363
Score = 141 bits (156), Expect = 9e-29
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||||| ||||| || ||||||||||| | | |||| | ||
Sbjct 83252570 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATC 83252511
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||| ||||||||| | ||||||| ||||||||| || ||||| ||||| || ||
Sbjct 83252510 TTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 83252451
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| || || ||| || ||| | || |||| || ||||| || | ||| | |||
Sbjct 83252450 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGT 83252391
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||||||||| || || ||||| |||||||||||
Sbjct 83252390 CTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355
>seq24
Length=78163535
Score = 136 bits (150), Expect = 4e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| | ||||||||||| || || || |||||||||||||| || |
Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 22107679
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | | ||||| || |||||||| ||| | || || | |||||||| |||||
Sbjct 22107680 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 22107739
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||||||| || || || || || ||||||| || | |||||| || || ||
Sbjct 22107740 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 22107799
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTT 64445
|| | ||| | |||||| || |||| || || ||||||||||||||||
Sbjct 22107800 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq5
Length=178027732
Score = 100 bits (110), Expect = 3e-16
Identities = 123/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || || || | ||||| ||||| || ||||||||||| | | ||||| | ||
Sbjct 139076902 AAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATC 139076961
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||| ||| | ||||||| ||||||||| || ||||| ||||| || ||
Sbjct 139076962 TTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATC 139077021
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTC 64398
|| || || ||| || ||| | || |||| || ||||| ||
Sbjct 139077022 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTC 139077069
Score = 84.2 bits (92), Expect = 2e-11
Identities = 151/219 (69%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTG-CGACG---GTGC 64283
||| | ||| ||||||| || || || |||||||||||||| || | | | | | |
Sbjct 42512305 TCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCC 42512364
Query 64284 GCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTT 64343
||||| || |||||||| ||| | || || | |||||||| |||||||||||||
Sbjct 42512365 ATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTT 42512424
Query 64344 CTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAG 64403
| || || || || || ||||||| || | |||| || | || || | ||
Sbjct 42512425 CCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAG 42512484
Query 64404 TTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCA 64442
| | |||||| || |||| || | |||||||| ||||
Sbjct 42512485 TGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
>seq13
Length=89791019
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| |||| | ||||| | || | || || ||||| || || ||||| ||||
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | || || ||||| ||||| || | || || ||||||||||| || ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|| || || || ||||| | |||| ||||| ||| ||| | || |||| || || ||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGA-TTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 87684594
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | ||||||||| |||| || || || || || |||||
Sbjct 87684593 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499573107216760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |