Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq13 100 3e-16
seq24 82.4 8e-11
seq1 82.4 8e-11
>seq13
Length=89791019
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||||||||||| ||| | || || || | | | ||||| || || || ||||||||
Sbjct 87684773 GCCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 87684714
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| ||| || ||||| || ||||| || | |||| |||||||| ||||| || ||
Sbjct 87684713 CAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGG 87684654
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| |||||| ||| | | || | |||||| | | ||| ||
Sbjct 87684653 GATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 87684594
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || ||||| || || ||||| ||||||||
Sbjct 87684593 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq24
Length=78163535
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| |||| ||| | | ||||||||||||||||||||||| || ||||| ||
Sbjct 22107635 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 22107694
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|| ||||| || || | | |||| || | || ||||| ||||| || ||||| || ||
Sbjct 22107695 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 22107754
Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| || |||| | ||| | || || | | || ||||||| || | ||
Sbjct 22107755 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 22107814
Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| || ||||| || || || ||||| |||||
Sbjct 22107815 CTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847
>seq1
Length=104504130
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701
|||| ||| || || | ||| |||||||||||||| ||| ||||| || ||||| |||
Sbjct 62754019 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 62754078
Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGG 153739
|| || ||||| || | |||||| |||||||||| ||
Sbjct 62754079 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGG 62754116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496191192548880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |