Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 7e-14 >seq1 Length=104504130 Score = 93.3 bits (102), Expect = 7e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | |||||| || ||||||| ||| || || || || || ||||| Sbjct 62742785 CCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGTATGTT 62742844 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||||||| || |||||| ||||| | || || ||||| |||| | ||| | Sbjct 62742845 CAAAGACTGGCTTTGATCAATGAAA-GCGCCTCTCTCGGCTGCCATCTTGAGTACGGTTT 62742903 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| ||||| Sbjct 62742904 TCTGAGAGATTTCCCACACAGTCTT 62742928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795041105168240