Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq24 154 3e-32 seq23 143 6e-29 seq5 129 1e-24 seq11 102 2e-16 seq13 96.9 8e-15 seq12 87.8 4e-12 seq4 87.8 4e-12 >seq24 Length=78163535 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || ||||| ||||||||||| | ||||||||||| |||||| Sbjct 22107627 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 22107686 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||||| ||||| || || ||||| || | |||||||| ||| ||||||| Sbjct 22107687 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 22107746 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || ||| | || || | | ||| || || | Sbjct 22107747 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 22107806 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| |||||||| Sbjct 22107807 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTG 22107844 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989 ||| ||| ||||| || || ||||| ||||||||||| | |||||| | || |||||| Sbjct 22107726 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACA 22107667 Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 | || || ||||| |||||||| || || ||||||||||| Sbjct 22107666 TTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCG 22107627 >seq23 Length=109465363 Score = 143 bits (158), Expect = 6e-29 Identities = 163/218 (75%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || ||||| |||||||| | ||||||||| || ||| ||||| ||| Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| |||||| | | || || |||| ||||| ||| Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 || || || || || ||||| || ||||| |||||| Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 83252355 >seq5 Length=178027732 Score = 129 bits (142), Expect = 1e-24 Identities = 162/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG-- 199466 |||||||||| ||||| || ||||| ||||||||||| | ||||||||||| ||||| Sbjct 42512300 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 42512359 Query 199467 --TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT 199524 ||| || ||||||||| ||||| || || ||||| || | |||||||| ||| ||| Sbjct 42512360 TATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAAT 42512419 Query 199525 TCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATC 199584 |||||| ||||| ||||| ||| || ||| | | | || | | | || || Sbjct 42512420 TCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTC 42512479 Query 199585 CAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| ||||| || || |||| ||||| || Sbjct 42512480 GAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTG 42512521 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || |||||||| || |||| |||||| |||| | ||| | |||||| Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| || ||| ||||| ||| Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||||| |||| |||||| Sbjct 139077023 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| ||||| || |||| ||||||||||| || || | ||||| Sbjct 29064683 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 29064742 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515 ||||||||| || ||||| ||||| | | ||||||||| Sbjct 29064743 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGA----CTTTGGCCGATTAC 200985 ||| ||| ||||| || || ||||| |||||||| || ||| ||||| | || ||| Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTAC 42512344 Query 200986 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||| | || || ||||| |||||||| ||||| ||||||||||| Sbjct 42512343 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 42512300 >seq11 Length=140388259 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 || |||||| ||||| || ||||| |||||||| || | |||||||| || ||||| | Sbjct 76921590 GACGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGAC 76921531 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 || ||||||||| | |||||| || | ||| || | |||||||| ||| || ||||| Sbjct 76921530 ATCTATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTT 76921471 Query 199530 CTCGCTCCTGAATCTT 199545 | ||||||||||| Sbjct 76921470 CCTTATCCTGAATCTT 76921455 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || |||| Sbjct 89714906 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 89714965 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||||| ||| ||||||| Sbjct 89714966 TCAGTCTTTGCTGGTCAGGAGGAATTCCT 89714994 >seq13 Length=89791019 Score = 96.9 bits (106), Expect = 8e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || ||||| || |||| |||||||| | || ||| | ||||| Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || |||||||| |||||||||||||| || || || || || Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || || | |||||| | | || || || | ||||| || Sbjct 87684637 TGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 87684579 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || |||||||| || || Sbjct 87684578 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 87684549 >seq12 Length=127780087 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| || || || ||| | ||||||||||| | | |||||||| |||| Sbjct 13420453 AAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCA----AAGTATG 13420398 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| ||||| || || ||||| || | || ||| | ||| ||||| ||| Sbjct 13420397 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTTTC 13420338 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||| ||||| ||| || ||| | || || | | | || || | || Sbjct 13420337 CTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAGAGT 13420278 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || | || || ||||||||||| || Sbjct 13420277 GATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTG 13420242 >seq4 Length=81198604 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| | ||| ||||| ||||| || |||| ||||||||||| || || |||| Sbjct 5807556 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATC 5807497 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||||||| || || || ||||| | | |||||||| ||| | | || ||| Sbjct 5807496 TTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCC------CTC 5807443 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || ||||| ||| | |||| |||||| | | || || |||| ||||| || Sbjct 5807442 TTGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 5807383 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 5807382 CTTACCAGTCAAGGTCTTCACGAAGATCTG 5807353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178748210474093