Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq24 154 3e-32
seq23 143 6e-29
seq5 129 1e-24
seq11 102 2e-16
seq13 96.9 8e-15
seq12 87.8 4e-12
seq4 87.8 4e-12
>seq24
Length=78163535
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| || || || ||||| ||||||||||| | ||||||||||| ||||||
Sbjct 22107627 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 22107686
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| |||||||||||| ||||| || || ||||| || | |||||||| ||| |||||||
Sbjct 22107687 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCT 22107746
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
|| ||||| ||||| ||| || ||| | || || | | ||| || || |
Sbjct 22107747 TCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGA 22107806
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| ||||| || || ||||| ||||||||
Sbjct 22107807 GTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTG 22107844
Score = 91.5 bits (100), Expect = 3e-13
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 200989
||| ||| ||||| || || ||||| ||||||||||| | |||||| | || ||||||
Sbjct 22107726 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACA 22107667
Query 200990 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
| || || ||||| |||||||| || || |||||||||||
Sbjct 22107666 TTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCG 22107627
>seq23
Length=109465363
Score = 143 bits (158), Expect = 6e-29
Identities = 163/218 (75%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||||
Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || ||||| |||||||| | ||||||||| || ||| ||||| |||
Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|| ||||| ||||||| |||| |||||| | | || || |||| ||||| |||
Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
|| || || || || ||||| || ||||| ||||||
Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTG---CATTTT 83252355
>seq5
Length=178027732
Score = 129 bits (142), Expect = 1e-24
Identities = 162/222 (73%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAG-- 199466
|||||||||| ||||| || ||||| ||||||||||| | ||||||||||| |||||
Sbjct 42512300 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 42512359
Query 199467 --TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAAT 199524
||| || ||||||||| ||||| || || ||||| || | |||||||| ||| |||
Sbjct 42512360 TATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAAT 42512419
Query 199525 TCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATC 199584
|||||| ||||| ||||| ||| || ||| | | | || | | | || ||
Sbjct 42512420 TCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTC 42512479
Query 199585 CAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||||| ||||| ||||| || || |||| ||||| ||
Sbjct 42512480 GAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTG 42512521
Score = 116 bits (128), Expect = 9e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || |||||||| || |||| |||||| |||| | ||| | ||||||
Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| | ||||||||| || ||| ||||| |||
Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||| ||||||| |||| ||||||
Sbjct 139077023 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| | ||| ||||| ||||| || |||| ||||||||||| || || | |||||
Sbjct 29064683 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 29064742
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC 199515
||||||||| || ||||| ||||| | | |||||||||
Sbjct 29064743 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 4/104 (4%)
Strand=Plus/Minus
Query 200930 AAAAACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGA----CTTTGGCCGATTAC 200985
||| ||| ||||| || || ||||| |||||||| || ||| ||||| | || |||
Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTAC 42512344
Query 200986 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
||| | || || ||||| |||||||| ||||| |||||||||||
Sbjct 42512343 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCG 42512300
>seq11
Length=140388259
Score = 102 bits (112), Expect = 2e-16
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
|| |||||| ||||| || ||||| |||||||| || | |||||||| || ||||| |
Sbjct 76921590 GACGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGAC 76921531
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
|| ||||||||| | |||||| || | ||| || | |||||||| ||| || |||||
Sbjct 76921530 ATCTATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTT 76921471
Query 199530 CTCGCTCCTGAATCTT 199545
| |||||||||||
Sbjct 76921470 CCTTATCCTGAATCTT 76921455
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||| | ||||||||||| |||||| | |||||||||||| ||||| || || ||||
Sbjct 89714906 CCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGA 89714965
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || | |||||||| ||| |||||||
Sbjct 89714966 TCAGTCTTTGCTGGTCAGGAGGAATTCCT 89714994
>seq13
Length=89791019
Score = 96.9 bits (106), Expect = 8e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| || | ||| || || ||||| || |||| |||||||| | || ||| | |||||
Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|||||||| || || |||||||| |||||||||||||| || || || || ||
Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638
Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| || ||| || || || || | |||||| | | || || || | ||||| ||
Sbjct 87684637 TGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 87684579
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| || || |||||||| || ||
Sbjct 87684578 CTTGCCCGTCAGGGTCTTCACAAAGATCTG 87684549
>seq12
Length=127780087
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| || || || ||| | ||||||||||| | | |||||||| ||||
Sbjct 13420453 AAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCA----AAGTATG 13420398
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||| ||||| || || ||||| || | || ||| | ||| ||||| |||
Sbjct 13420397 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTTTC 13420338
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
| ||| ||||| ||| || ||| | || || | | | || || | ||
Sbjct 13420337 CTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAGAGT 13420278
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| ||||| || | || || ||||||||||| ||
Sbjct 13420277 GATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTG 13420242
>seq4
Length=81198604
Score = 87.8 bits (96), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 6/210 (3%)
Strand=Plus/Minus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| | ||| ||||| ||||| || |||| ||||||||||| || || ||||
Sbjct 5807556 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATC 5807497
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
||||||||| || || || ||||| | | |||||||| ||| | | || |||
Sbjct 5807496 TTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCC------CTC 5807443
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| ||||| ||| | |||| |||||| | | || || |||| ||||| ||
Sbjct 5807442 TTGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 5807383
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| || | || ||||| || || ||
Sbjct 5807382 CTTACCAGTCAAGGTCTTCACGAAGATCTG 5807353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178748210474093
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