Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq13 150 2e-31
seq23 127 2e-24
seq5 89.7 5e-13
seq4 84.2 2e-11
seq24 82.4 8e-11
>seq13
Length=89791019
Score = 150 bits (166), Expect = 2e-31
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || |||||||| ||||||||| | || |||||| |||
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | |||| ||||||| ||||| ||||| || || | |||||
Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | |||||||||||||||||| || | ||||| || ||||||||
Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| || || | || ||||| |||||||| ||| || ||||||||
Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGGC 87684773
>seq23
Length=109465363
Score = 127 bits (140), Expect = 2e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| ||||| || || || || ||||| |||||||| | || || ||| ||
Sbjct 83252355 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCC 83252414
Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | | |||| | || | || |||| || || || || |||||| | ||
Sbjct 83252415 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 83252473
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| ||||||| | || |||||||||||||| || | |||| || || ||
Sbjct 83252474 CCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTA 83252533
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||||| || || |||| ||||| |||| || ||| |||| || |||
Sbjct 83252534 CAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTGTGAGGGGTGGC 83252585
>seq5
Length=178027732
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || || || |||||| | ||||| ||| ||||||| | || |||||
Sbjct 139077030 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGCAAG 139076971
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | ||||| || || ||||||||||| || || |||| |||||
Sbjct 139076970 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 139076911
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||| |||| || |||
Sbjct 139076910 CTGGTCCTTCGTCTGAGGGGTGGC 139076887
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417
||||| ||| || | || | || || ||||||||||| || | ||||||||| |||
Sbjct 29064781 GACCAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGAC 29064722
Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||||| || || | || ||||| ||||| ||||| ||||| || ||
Sbjct 29064721 TACAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 29064669
>seq4
Length=81198604
Score = 84.2 bits (92), Expect = 2e-11
Identities = 153/222 (69%), Gaps = 8/222 (4%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || || || ||||||||| | || || ||| |||
Sbjct 5807350 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 5807409
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | || || || | || |||| ||||||| | || | ||||
Sbjct 5807410 GACACCATCGAGAATGCC-AAGGCCAAGATCC------AAGAGGGCACCTCCCCGAACCA 5807462
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || || ||||||||||| || | || |||||| ||||||||
Sbjct 5807463 GCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGTGCACACCCTGTCTGACTACAA 5807522
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAG 38464
|||||| || || | || ||||| ||||| ||| | |||||
Sbjct 5807523 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGTGCTTGAG 5807564
>seq24
Length=78163535
Score = 82.4 bits (90), Expect = 8e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301
|||||||||| ||||| || || || ||||| || |||||||| |||| ||||| ||
Sbjct 22107849 AAATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCT 22107790
Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
| || | | ||| | || | || |||| || || || |||||||| | ||||
Sbjct 22107789 CGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACC 22107730
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| || | || || | || ||||| || ||||| || | | || | |||||||
Sbjct 22107729 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 22107670
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| |||||||| | || || ||| | ||| ||
Sbjct 22107669 ACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 22107635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500101031455360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |