Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq1731 181 4e-40
seq2050 156 2e-32
seq24 125 3e-23
seq1070 100 1e-15
seq11 100 1e-15
seq27 93.3 2e-13
seq5 91.5 6e-13
seq31 86.0 2e-11
seq1410 84.2 9e-11
>seq1731
Length=14715
Score = 181 bits (200), Expect = 4e-40
Identities = 365/533 (68%), Gaps = 10/533 (2%)
Strand=Plus/Plus
Query 451967 GGAAAACAACTATGTAAGAGCG-TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGT 452025
|||||| ||| ||| | || | | || || |||||||||||||||||||| || || ||
Sbjct 4222 GGAAAAGAACCATGCA-GATCAATTAACCCAGATGAAGCTGTTGCATATGGAGCAGCTGT 4280
Query 452026 TCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAG 452084
||||| || ||| || | || | || | ||| ||| ||| | || || | |
Sbjct 4281 ACAAGCTGCCATTTTATCTGGCAACCAATCAGAAAAGATTCA-AGAGTTGCTCTTGTTGG 4339
Query 452085 ATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTA 452144
|||| | || | || |||||| | || ||||||||||| | ||||| || ||||
Sbjct 4340 ATGTCGCTCCATTGTCACTTGGATTAGAGACAGCTGGTGGTGTTATGACAGTGTTGATTA 4399
Query 452145 AACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACC 452204
|| || || | || || || || | |||| |||| ||| ||| ||
Sbjct 4400 AAAGAAATACAACAATACCAACCAAGAAAAACCAAATCTTTACAACAAACGAAGATCGCC 4459
Query 452205 AACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264
|| |||||| |||||||| |||||||||||| | ||||||||| |||||| ||
Sbjct 4460 AAGAAGGTGTGTTGATTCAAGTATTTGAAGGAGAAAGAGCAATGACAAAAGATAACAACC 4519
Query 452265 AACTAGGAGAATTTACTCTT---TCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAA 452321
||||||| || || | ||| | || | | || ||||| ||| || ||||
Sbjct 4520 TACTAGGA-AAGTTCCACTTGAGTGGAATAG--CACCAGCACCAAGAGGAGTACCACAAA 4576
Query 452322 TTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAAT 452381
| || |||| | |||| |||||||||||||||| | || || | ||| | || ||||
Sbjct 4577 TCGAGGTTACATTTGATATTGATGCAAATGGTATCTTGAACGTCACTGCTATGGATAAAT 4636
Query 452382 CATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAG 452441
|| | |||||||||||| | |||||||||| |||||||| || || ||||||
Sbjct 4637 CAACAGGAAAATCAGAACACGTTACAATTACCAATGATAAGGGACGCTTGAGCCAAGAAG 4696
Query 452442 ATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAA 452494
| || || ||||| || || || ||||||| |||||| || |||||| ||
Sbjct 4697 AGATAGACCGTATGGTTGAAGAGGCCGAAAAATACAAGGAAGAAGATGAAAAA 4749
Score = 96.9 bits (106), Expect = 1e-14
Identities = 352/540 (65%), Gaps = 27/540 (5%)
Strand=Plus/Minus
Query 437324 ACAACCTAGAAGTTATTTATCAAGTGAACCTGCTGTTGCCCGTGCTAATCAAAATGGATG 437383
||||||||||||||| |||| | |||||| |||||| | ||||| ||||||| |
Sbjct 716 ACAACCTAGAAGTTACCTATCCACTGAACCAGCTGTTTTAAGAGCTAACCAAAATGATTT 657
Query 437384 GGATTGTGTGGCACAATTTCGTGAAATTGCAGGAAAAC---GTATCAAATGTGGCCATAA 437440
|| || ||| |||| ||| | ||| || || |||| | | ||| |||
Sbjct 656 TGACCCAGTTAAACAGTTTCATGATAGAGCA--AATACATTGTATAAGAA-TGGACATGT 600
Query 437441 TGTAACTAAAGTTGAAGGTATTGTTCTTGGTGGAACATGGTCTTATTATCCAAAAGATTA 437500
|| ||| | || || || | || || |||||| | || |||| | |||
Sbjct 599 AATAGACAAAATAGAGATAATAGTATTAGGAGGTACATGGAGTGGATACCCAAGAAGTTA 540
Query 437501 TCAAATAAAATTTATTCGTGATTTTTATTATGCAGCAAATACTCTGTATGCAGAACTTCC 437560
|||| | | ||||| | ||||| | |||||| || |||| | |||| |||| |||
Sbjct 539 TCAAGAAGAGTTTATAAGAGATTTATTTTATGCTGCTAATA---TATATGGAGAAGATCC 483
Query 437561 T----CTTCGCCCTAAACA--ATCTATGAAAGAGGAAATTAAGTTGAATGAAACAACAAG 437614
||| ||| | | | | || | ||| | || | ||||| || | |
Sbjct 482 AAGTACTTGTAGAGAAAGAGGAACATTAGAATATGAACATGAGATCAATGAGACTAGTAA 423
Query 437615 GTGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAAT 437674
||| | || || || || |||||||||||| |||| ||| || | ||| | |||||
Sbjct 422 ATGTAGGATTATAGGATTGACACTTGAAACAAGACCAGATAGAATAAATCCAAGTGAAAT 363
Query 437675 TACAATTCTTCGAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAATGA 437734
| | | || | | | ||||||||| ||||||||||||||||| ||||||| | |
Sbjct 362 TGAATTACTAAGGAAATTTGGATGTACTAGAGTACAACTTGGAATACAACATACATGTAA 303
Query 437735 TGATATT-TTGAATTACATTAATCGAGGGTGTAAACACAGTA----AGTCAGTGAGAGCA 437789
||||||| | ||||| | ||| |||| ||||| || | ||| | ||||||
Sbjct 302 TGATATTCTAGAATT-TGTGAATAGAGG----CCACACAATAGAAGATTCAATAAGAGCA 248
Query 437790 ATCAAACTACTTAA-AAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGATTTGCC 437848
|| | | | || || || ||||||| || ||||| ||| | ||||||||||| ||
Sbjct 247 ATTCATTTGTTGAAGGAAAACT-GTTTTAAAGTAGATATCCATATTATGCCAGATTTACC 189
>seq2050
Length=9667
Score = 156 bits (172), Expect = 2e-32
Identities = 362/532 (68%), Gaps = 23/532 (4%)
Strand=Plus/Minus
Query 437325 CAACCTAGAAGTTATTTATCAAGTGAACCTGCTGTTGCCCGTGCTAATCAAAATGGATGG 437384
||||| ||||||||| |||| | |||||| ||||| | ||||| ||||||| |
Sbjct 8834 CAACCAAGAAGTTATCTATCTACTGAACCAGCTGTATTAAGAGCTAACCAAAATGATTTT 8775
Query 437385 GATTGTGTGGCACAATTTCGTGAAATTGCAGGAAAAC---GTATCAAATGTGGCCATAAT 437441
|| || |||||||| ||| | ||| || || |||| ||| ||| |||
Sbjct 8774 GACCCAGTTAAACAATTTCATGATAGAGCA--AATACATTGTATAAAAA-TGGACATGTA 8718
Query 437442 GTAACTAAAGTTGAAGGTATTGTTCTTGGTGGAACATGGTCTTATTATCCAAAAGATTAT 437501
|| |||| | ||| || || | |||||||||||| | ||||||| | |||||
Sbjct 8717 ATAGATAAAATAGAAATAATAGTATTAGGTGGAACATGGAGTGGATATCCAAGAAATTAT 8658
Query 437502 CAAATAAAATTTATTCGTGATTTTTATTATGCAGCAAATACTCTGTATGCAGAACTTCCT 437561
||| | ||||||| | ||||| | |||||| || |||| | |||| |||| |||
Sbjct 8657 CAAGAAGAATTTATAAGAGATTTATTTTATGCTGCTAATA---TATATGGAGAAGATCCA 8601
Query 437562 CTTCGCCCTAAACAATCT-----ATGA-AAGAGGAAATTAAGTTGAATGAAACAACAAGG 437615
| || | || || | || | ||| |||| | |||||||||| |
Sbjct 8600 AATAATTGTAGAGAAAGAGGAACATTAGAATATGAACATAAGATTAATGAAACAAGTAAA 8541
Query 437616 TGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAATT 437675
||| | ||||| || |||||| | ||||| |||| ||| || | ||| || ||||||
Sbjct 8540 TGTAGAATAATAGGATTAACATTAGAAACCAGACCAGATAGAATAAATCCAAATGAAATT 8481
Query 437676 ACAATTCTTC--GAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAATG 437733
|||| || ||| || ||||||||| ||||||||||||||||| ||||||| |||
Sbjct 8480 G-AATTATTAAGGAAATT-TGGATGTACTAGAGTACAACTTGGAATACAACATACAAATA 8423
Query 437734 ATGATAT-TTTGAATTACATTAATCGAGGGTGTAAACACAGTA-AGTCAGTGAGAGCAAT 437791
|| |||| || |||||| | ||| |||| || | | || | | ||| | | ||||||
Sbjct 8422 ATAATATATTAGAATTA-GTAAATAGAGGACATACA-ATAGAAGATTCAATAAAAGCAAT 8365
Query 437792 CAAACTACTTAAAAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGAT 437843
| || | ||| | | ||||||| || ||||| ||| | |||||||||
Sbjct 8364 ATATTTATTAAAAGAGAATTGTTTTAAAGTTGATATACATATTATGCCAGAT 8313
>seq24
Length=78163535
Score = 125 bits (138), Expect = 3e-23
Identities = 159/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108
|||| | |||||||| || || ||||| || || || || ||||| || || ||| | ||
Sbjct 22107848 AATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 22107789
Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168
|||| || ||| | | || || || || ||||||||||||||||||||||| ||
Sbjct 22107788 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 22107729
Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228
||| | | || || | || || ||||| ||||||||| | |||||| | || || ||
Sbjct 22107728 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 22107669
Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| |||| || |||||
Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 22107630
>seq1070
Length=10791
Score = 100 bits (110), Expect = 1e-15
Identities = 224/325 (69%), Gaps = 20/325 (6%)
Strand=Plus/Plus
Query 421556 CTCTATATAATGAATTTCTAAAAATTTCAGCAGTCA-TAATAACTAGACTAGCACCAGGA 421614
||||||||||| |||||| || ||||| | || | || ||| | | ||| |||
Sbjct 386 CTCTATATAATAGATTTCTTAATATTTCTGTTGTAACTATTAAACATGATC-CACTTGGA 444
Query 421615 TTAACTTTATT-ATCTCCAGTCATAATTCCAA-TA--TCTGAT---ATTTCTTCAGAAAA 421667
||| | | || |||||| || || ||||||| || |||||| | || || |||
Sbjct 445 TTA-CATAATACATCTCCTGTAATTATTCCAACTACTTCTGATCCGAATTTGTCTTTAAA 503
Query 421668 ATCTTTATATTTTTGATTGGATAAAGCTTTAATTGGACTAATATAAACTACCTTTTTATT 421727
||| |||||||||| || ||||| |||||||||||||| |||| | | | ||||
Sbjct 504 TTCTCTATATTTTTGGTTTGATAATGCTTTAATTGGACTTGTATATATTGCTTTTTGTCC 563
Query 421728 TTCACTCATTGCTTTTGCTATGGCATATTCAGCAGGTACAGTTTTACCACTTCCTGTTGC 421787
|| ||| | ||||| |||||| ||||| || ||| ||| || || ||| |||
Sbjct 564 TTTACTTAATGCTTGTGCTATTGCATACTCTGCAACTACTGTCTTTCCAGCAGATGTATG 623
Query 421788 TACTGCCACAAATACATTTT---CATT-ATTATCT-ATACCTTCACATGCATACTTTTGA 421842
| ||| ||||| |||| || |||| || | | ||| || || | |||||||
Sbjct 624 TGCTGATACAAACACATGTTTCCCATTWATCAAATGATATATTGAC-----TTCTTTTGA 678
Query 421843 AAATGGTCTAATTCAAAAGAAAATT 421867
|||| ||||||||||| | | |||
Sbjct 679 AAATCATCTAATTCAAATGGATATT 703
>seq11
Length=140388259
Score = 100 bits (110), Expect = 1e-15
Identities = 90/113 (80%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
|||||| ||||||| ||||||| || || |||||||||||||| ||||| || |||||
Sbjct 15221242 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 15221301
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| || ||||| | | || || ||||| ||
Sbjct 15221302 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 15221354
>seq27
Length=84643473
Score = 93.3 bits (102), Expect = 2e-13
Identities = 152/216 (70%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106
|||||||| |||||||||||| || || || |||| ||| || | || | || |
Sbjct 18049584 TGCAATTTCTGGCACTAGGGGGTCATCTGGGTTTGAATCA--CATAGCAGTGAACAAATG 18049641
Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166
|||||||| |||||| ||| |||| || || ||| | ||||| |||||| | |
Sbjct 18049642 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCATTGTGATTTTAGAATATCAAGA 18049701
Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226
||||| || || | ||||||||||||||||||| ||| ||||| || |||
Sbjct 18049702 CAAATGCTGCCATTACTT-TAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 18049760
Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262
|| || || | || |||||| ||||||| ||||
Sbjct 18049761 GGTGGTTTGAAAGGGTAGTCTGAAGGAAAATGAATT 18049796
>seq5
Length=178027732
Score = 91.5 bits (100), Expect = 6e-13
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Minus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
|||||||| | || ||||| || || || || ||||| || || | | || |||| |
Sbjct 42512518 ATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGGATAGC 42512459
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
|| ||| | | || || || || ||||||||||||||||||||||| || ||| |
Sbjct 42512458 ATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 42512399
Query 391176 TTAATTTTCTCAGGGAAACAACTTGA----AGATGGAAGAACTTTGGCGGATTATAATAT 391231
| || || | || || ||||| || ||||||| |||||| | || || || ||
Sbjct 42512398 CTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTACAACAT 42512339
Query 391232 TGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
| | ||||| | || ||||| | || || |||||
Sbjct 42512338 TCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 42512303
>seq31
Length=75455120
Score = 86.0 bits (94), Expect = 2e-11
Identities = 150/218 (69%), Gaps = 3/218 (1%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||| | || || ||||| | || || || |||||||| || || | ||
Sbjct 60055368 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCG 60055309
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | || || || || |||||||||||| |||||||||| ||
Sbjct 60055308 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAG 60055249
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || || | || || ||||| |||||| || | |||||| | || ||
Sbjct 60055248 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGTACTTTGAC---CTACAAC 60055192
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || || || | || || |||||
Sbjct 60055191 ATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACT 60055154
>seq1410
Length=27214
Score = 84.2 bits (92), Expect = 9e-11
Identities = 182/270 (67%), Gaps = 2/270 (1%)
Strand=Plus/Minus
Query 364737 ATGGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTT 364796
||||||||| ||||||| || ||||| |||||||| | |||| || || |||
Sbjct 9602 ATGGCACAAGATTTTGTAGGTTCAAATAACTTAAATTTATTGTTACCATGTGGTCAGTTT 9543
Query 364797 GGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAGCC-CACGTTATATTTGGACCAAACT 364855
|||||| || | ||||| || ||| | || ||| |||||||||| | || ||| |
Sbjct 9542 GGAAGTAGAAAAGAAGGAGGAAAGGATGCAGC-AGCAGCACGTTATATATTTACAAAATT 9484
Query 364856 TGAAAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAA 364915
| | | || ||| ||||| | |||| ||| |||||||| | |||| ||
Sbjct 9483 ATCACCACTAACAAGATATGTATTTTTACAAGATGATGATCCAATTCTTGATTACCAGAA 9424
Query 364916 TGATGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGT 364975
||| || || ||||||||||| | |||| | || || || || ||| | || ||
Sbjct 9423 TGAAGAAGGTCAGATGGTTGAACCATTTTATTATTTACCAATAATACCAATGGTGTTGGT 9364
Query 364976 AAATGGAGCAACAGGCATTGGTACTGGTTT 365005
|| || || ||| ||||| || |||||
Sbjct 9363 TAACGGTTCAGAAGGTATTGGAACAGGTTT 9334
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975427821833732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |