Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1731 181 4e-40 seq2050 156 2e-32 seq24 125 3e-23 seq1070 100 1e-15 seq11 100 1e-15 seq27 93.3 2e-13 seq5 91.5 6e-13 seq31 86.0 2e-11 seq1410 84.2 9e-11 >seq1731 Length=14715 Score = 181 bits (200), Expect = 4e-40 Identities = 365/533 (68%), Gaps = 10/533 (2%) Strand=Plus/Plus Query 451967 GGAAAACAACTATGTAAGAGCG-TAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGT 452025 |||||| ||| ||| | || | | || || |||||||||||||||||||| || || || Sbjct 4222 GGAAAAGAACCATGCA-GATCAATTAACCCAGATGAAGCTGTTGCATATGGAGCAGCTGT 4280 Query 452026 TCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAGGAGATATTCTGTTAGTAG 452084 ||||| || ||| || | || | || | ||| ||| ||| | || || | | Sbjct 4281 ACAAGCTGCCATTTTATCTGGCAACCAATCAGAAAAGATTCA-AGAGTTGCTCTTGTTGG 4339 Query 452085 ATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTA 452144 |||| | || | || |||||| | || ||||||||||| | ||||| || |||| Sbjct 4340 ATGTCGCTCCATTGTCACTTGGATTAGAGACAGCTGGTGGTGTTATGACAGTGTTGATTA 4399 Query 452145 AACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAACC 452204 || || || | || || || || | |||| |||| ||| ||| || Sbjct 4400 AAAGAAATACAACAATACCAACCAAGAAAAACCAAATCTTTACAACAAACGAAGATCGCC 4459 Query 452205 AACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATA 452264 || |||||| |||||||| |||||||||||| | ||||||||| |||||| || Sbjct 4460 AAGAAGGTGTGTTGATTCAAGTATTTGAAGGAGAAAGAGCAATGACAAAAGATAACAACC 4519 Query 452265 AACTAGGAGAATTTACTCTT---TCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAA 452321 ||||||| || || | ||| | || | | || ||||| ||| || |||| Sbjct 4520 TACTAGGA-AAGTTCCACTTGAGTGGAATAG--CACCAGCACCAAGAGGAGTACCACAAA 4576 Query 452322 TTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAAT 452381 | || |||| | |||| |||||||||||||||| | || || | ||| | || |||| Sbjct 4577 TCGAGGTTACATTTGATATTGATGCAAATGGTATCTTGAACGTCACTGCTATGGATAAAT 4636 Query 452382 CATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAG 452441 || | |||||||||||| | |||||||||| |||||||| || || |||||| Sbjct 4637 CAACAGGAAAATCAGAACACGTTACAATTACCAATGATAAGGGACGCTTGAGCCAAGAAG 4696 Query 452442 ATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGAACAA 452494 | || || ||||| || || || ||||||| |||||| || |||||| || Sbjct 4697 AGATAGACCGTATGGTTGAAGAGGCCGAAAAATACAAGGAAGAAGATGAAAAA 4749 Score = 96.9 bits (106), Expect = 1e-14 Identities = 352/540 (65%), Gaps = 27/540 (5%) Strand=Plus/Minus Query 437324 ACAACCTAGAAGTTATTTATCAAGTGAACCTGCTGTTGCCCGTGCTAATCAAAATGGATG 437383 ||||||||||||||| |||| | |||||| |||||| | ||||| ||||||| | Sbjct 716 ACAACCTAGAAGTTACCTATCCACTGAACCAGCTGTTTTAAGAGCTAACCAAAATGATTT 657 Query 437384 GGATTGTGTGGCACAATTTCGTGAAATTGCAGGAAAAC---GTATCAAATGTGGCCATAA 437440 || || ||| |||| ||| | ||| || || |||| | | ||| ||| Sbjct 656 TGACCCAGTTAAACAGTTTCATGATAGAGCA--AATACATTGTATAAGAA-TGGACATGT 600 Query 437441 TGTAACTAAAGTTGAAGGTATTGTTCTTGGTGGAACATGGTCTTATTATCCAAAAGATTA 437500 || ||| | || || || | || || |||||| | || |||| | ||| Sbjct 599 AATAGACAAAATAGAGATAATAGTATTAGGAGGTACATGGAGTGGATACCCAAGAAGTTA 540 Query 437501 TCAAATAAAATTTATTCGTGATTTTTATTATGCAGCAAATACTCTGTATGCAGAACTTCC 437560 |||| | | ||||| | ||||| | |||||| || |||| | |||| |||| ||| Sbjct 539 TCAAGAAGAGTTTATAAGAGATTTATTTTATGCTGCTAATA---TATATGGAGAAGATCC 483 Query 437561 T----CTTCGCCCTAAACA--ATCTATGAAAGAGGAAATTAAGTTGAATGAAACAACAAG 437614 ||| ||| | | | | || | ||| | || | ||||| || | | Sbjct 482 AAGTACTTGTAGAGAAAGAGGAACATTAGAATATGAACATGAGATCAATGAGACTAGTAA 423 Query 437615 GTGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAAT 437674 ||| | || || || || |||||||||||| |||| ||| || | ||| | ||||| Sbjct 422 ATGTAGGATTATAGGATTGACACTTGAAACAAGACCAGATAGAATAAATCCAAGTGAAAT 363 Query 437675 TACAATTCTTCGAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAATGA 437734 | | | || | | | ||||||||| ||||||||||||||||| ||||||| | | Sbjct 362 TGAATTACTAAGGAAATTTGGATGTACTAGAGTACAACTTGGAATACAACATACATGTAA 303 Query 437735 TGATATT-TTGAATTACATTAATCGAGGGTGTAAACACAGTA----AGTCAGTGAGAGCA 437789 ||||||| | ||||| | ||| |||| ||||| || | ||| | |||||| Sbjct 302 TGATATTCTAGAATT-TGTGAATAGAGG----CCACACAATAGAAGATTCAATAAGAGCA 248 Query 437790 ATCAAACTACTTAA-AAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGATTTGCC 437848 || | | | || || || ||||||| || ||||| ||| | ||||||||||| || Sbjct 247 ATTCATTTGTTGAAGGAAAACT-GTTTTAAAGTAGATATCCATATTATGCCAGATTTACC 189 >seq2050 Length=9667 Score = 156 bits (172), Expect = 2e-32 Identities = 362/532 (68%), Gaps = 23/532 (4%) Strand=Plus/Minus Query 437325 CAACCTAGAAGTTATTTATCAAGTGAACCTGCTGTTGCCCGTGCTAATCAAAATGGATGG 437384 ||||| ||||||||| |||| | |||||| ||||| | ||||| ||||||| | Sbjct 8834 CAACCAAGAAGTTATCTATCTACTGAACCAGCTGTATTAAGAGCTAACCAAAATGATTTT 8775 Query 437385 GATTGTGTGGCACAATTTCGTGAAATTGCAGGAAAAC---GTATCAAATGTGGCCATAAT 437441 || || |||||||| ||| | ||| || || |||| ||| ||| ||| Sbjct 8774 GACCCAGTTAAACAATTTCATGATAGAGCA--AATACATTGTATAAAAA-TGGACATGTA 8718 Query 437442 GTAACTAAAGTTGAAGGTATTGTTCTTGGTGGAACATGGTCTTATTATCCAAAAGATTAT 437501 || |||| | ||| || || | |||||||||||| | ||||||| | ||||| Sbjct 8717 ATAGATAAAATAGAAATAATAGTATTAGGTGGAACATGGAGTGGATATCCAAGAAATTAT 8658 Query 437502 CAAATAAAATTTATTCGTGATTTTTATTATGCAGCAAATACTCTGTATGCAGAACTTCCT 437561 ||| | ||||||| | ||||| | |||||| || |||| | |||| |||| ||| Sbjct 8657 CAAGAAGAATTTATAAGAGATTTATTTTATGCTGCTAATA---TATATGGAGAAGATCCA 8601 Query 437562 CTTCGCCCTAAACAATCT-----ATGA-AAGAGGAAATTAAGTTGAATGAAACAACAAGG 437615 | || | || || | || | ||| |||| | |||||||||| | Sbjct 8600 AATAATTGTAGAGAAAGAGGAACATTAGAATATGAACATAAGATTAATGAAACAAGTAAA 8541 Query 437616 TGTCGTATAATTGGCTTAACACTTGAAACACGACCTGATTTTATTACTCCGAAAGAAATT 437675 ||| | ||||| || |||||| | ||||| |||| ||| || | ||| || |||||| Sbjct 8540 TGTAGAATAATAGGATTAACATTAGAAACCAGACCAGATAGAATAAATCCAAATGAAATT 8481 Query 437676 ACAATTCTTC--GAAGTTATGGATGTACCAGAGTACAACTTGGAATTCAACATATCAATG 437733 |||| || ||| || ||||||||| ||||||||||||||||| ||||||| ||| Sbjct 8480 G-AATTATTAAGGAAATT-TGGATGTACTAGAGTACAACTTGGAATACAACATACAAATA 8423 Query 437734 ATGATAT-TTTGAATTACATTAATCGAGGGTGTAAACACAGTA-AGTCAGTGAGAGCAAT 437791 || |||| || |||||| | ||| |||| || | | || | | ||| | | |||||| Sbjct 8422 ATAATATATTAGAATTA-GTAAATAGAGGACATACA-ATAGAAGATTCAATAAAAGCAAT 8365 Query 437792 CAAACTACTTAAAAATGCTGGTTTTAAGGTGGATATTCATTTGATGCCAGAT 437843 | || | ||| | | ||||||| || ||||| ||| | ||||||||| Sbjct 8364 ATATTTATTAAAAGAGAATTGTTTTAAAGTTGATATACATATTATGCCAGAT 8313 >seq24 Length=78163535 Score = 125 bits (138), Expect = 3e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | |||||||| || || ||||| || || || || ||||| || || ||| | || Sbjct 22107848 AATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 22107789 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 22107788 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 22107729 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 22107728 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 22107669 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 22107630 >seq1070 Length=10791 Score = 100 bits (110), Expect = 1e-15 Identities = 224/325 (69%), Gaps = 20/325 (6%) Strand=Plus/Plus Query 421556 CTCTATATAATGAATTTCTAAAAATTTCAGCAGTCA-TAATAACTAGACTAGCACCAGGA 421614 ||||||||||| |||||| || ||||| | || | || ||| | | ||| ||| Sbjct 386 CTCTATATAATAGATTTCTTAATATTTCTGTTGTAACTATTAAACATGATC-CACTTGGA 444 Query 421615 TTAACTTTATT-ATCTCCAGTCATAATTCCAA-TA--TCTGAT---ATTTCTTCAGAAAA 421667 ||| | | || |||||| || || ||||||| || |||||| | || || ||| Sbjct 445 TTA-CATAATACATCTCCTGTAATTATTCCAACTACTTCTGATCCGAATTTGTCTTTAAA 503 Query 421668 ATCTTTATATTTTTGATTGGATAAAGCTTTAATTGGACTAATATAAACTACCTTTTTATT 421727 ||| |||||||||| || ||||| |||||||||||||| |||| | | | |||| Sbjct 504 TTCTCTATATTTTTGGTTTGATAATGCTTTAATTGGACTTGTATATATTGCTTTTTGTCC 563 Query 421728 TTCACTCATTGCTTTTGCTATGGCATATTCAGCAGGTACAGTTTTACCACTTCCTGTTGC 421787 || ||| | ||||| |||||| ||||| || ||| ||| || || ||| ||| Sbjct 564 TTTACTTAATGCTTGTGCTATTGCATACTCTGCAACTACTGTCTTTCCAGCAGATGTATG 623 Query 421788 TACTGCCACAAATACATTTT---CATT-ATTATCT-ATACCTTCACATGCATACTTTTGA 421842 | ||| ||||| |||| || |||| || | | ||| || || | ||||||| Sbjct 624 TGCTGATACAAACACATGTTTCCCATTWATCAAATGATATATTGAC-----TTCTTTTGA 678 Query 421843 AAATGGTCTAATTCAAAAGAAAATT 421867 |||| ||||||||||| | | ||| Sbjct 679 AAATCATCTAATTCAAATGGATATT 703 >seq11 Length=140388259 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 15221242 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 15221301 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 15221302 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 15221354 >seq27 Length=84643473 Score = 93.3 bits (102), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--G 96106 |||||||| |||||||||||| || || || |||| ||| || | || | || | Sbjct 18049584 TGCAATTTCTGGCACTAGGGGGTCATCTGGGTTTGAATCA--CATAGCAGTGAACAAATG 18049641 Query 96107 GATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAA 96166 |||||||| |||||| ||| |||| || || ||| | ||||| |||||| | | Sbjct 18049642 GATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCATTGTGATTTTAGAATATCAAGA 18049701 Query 96167 CAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTA 96226 ||||| || || | ||||||||||||||||||| ||| ||||| || ||| Sbjct 18049702 CAAATGCTGCCATTACTT-TAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCTTA 18049760 Query 96227 GGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT 96262 || || || | || |||||| ||||||| |||| Sbjct 18049761 GGTGGTTTGAAAGGGTAGTCTGAAGGAAAATGAATT 18049796 >seq5 Length=178027732 Score = 91.5 bits (100), Expect = 6e-13 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||||| | || ||||| || || || || ||||| || || | | || |||| | Sbjct 42512518 ATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGGATAGC 42512459 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 || ||| | | || || || || ||||||||||||||||||||||| || ||| | Sbjct 42512458 ATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 42512399 Query 391176 TTAATTTTCTCAGGGAAACAACTTGA----AGATGGAAGAACTTTGGCGGATTATAATAT 391231 | || || | || || ||||| || ||||||| |||||| | || || || || Sbjct 42512398 CTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTACAACAT 42512339 Query 391232 TGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 | | ||||| | || ||||| | || || ||||| Sbjct 42512338 TCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACT 42512303 >seq31 Length=75455120 Score = 86.0 bits (94), Expect = 2e-11 Identities = 150/218 (69%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | || || ||||| | || || || |||||||| || || | || Sbjct 60055368 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCG 60055309 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || |||||||||||| |||||||||| || Sbjct 60055308 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAG 60055249 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| |||||| || | |||||| | || || Sbjct 60055248 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGTACTTTGAC---CTACAAC 60055192 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || || || | || || ||||| Sbjct 60055191 ATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACT 60055154 >seq1410 Length=27214 Score = 84.2 bits (92), Expect = 9e-11 Identities = 182/270 (67%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 364737 ATGGCACAAAATTTTGTTGGAAGTAATAATGTAAATTTACTAGAACCAAAAGGACAATTT 364796 ||||||||| ||||||| || ||||| |||||||| | |||| || || ||| Sbjct 9602 ATGGCACAAGATTTTGTAGGTTCAAATAACTTAAATTTATTGTTACCATGTGGTCAGTTT 9543 Query 364797 GGAAGTCGAGTAATGGGAGGTAAAGATTCTGCCAGCC-CACGTTATATTTGGACCAAACT 364855 |||||| || | ||||| || ||| | || ||| |||||||||| | || ||| | Sbjct 9542 GGAAGTAGAAAAGAAGGAGGAAAGGATGCAGC-AGCAGCACGTTATATATTTACAAAATT 9484 Query 364856 TGAAAAAGTGGCAGGATTAATATTTAGAAAAGAAGATAATCCAATTTTAAATTATATTAA 364915 | | | || ||| ||||| | |||| ||| |||||||| | |||| || Sbjct 9483 ATCACCACTAACAAGATATGTATTTTTACAAGATGATGATCCAATTCTTGATTACCAGAA 9424 Query 364916 TGATGATGGATTAATGGTTGAACCTGAATTTTATCTTCCTATTATTCCTATGATTTTAGT 364975 ||| || || ||||||||||| | |||| | || || || || ||| | || || Sbjct 9423 TGAAGAAGGTCAGATGGTTGAACCATTTTATTATTTACCAATAATACCAATGGTGTTGGT 9364 Query 364976 AAATGGAGCAACAGGCATTGGTACTGGTTT 365005 || || || ||| ||||| || ||||| Sbjct 9363 TAACGGTTCAGAAGGTATTGGAACAGGTTT 9334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975427821833732