Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq7 95.1 1e-14
seq3991 93.3 5e-14
seq5 93.3 5e-14
seq9721 89.7 6e-13
seq14 89.7 6e-13
seq1 82.4 9e-11
>seq7
Length=66841537
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 38432922 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 38432863
Query 136777 GGGAACAGCTTTTA 136790
|| || ||||||
Sbjct 38432862 CGGGCCA-CTTTTA 38432850
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 38434559 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38434501
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 38692836 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38692894
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 38742766 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38742824
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 39230572 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 39230630
Score = 86.0 bits (94), Expect = 7e-12
Identities = 53/57 (93%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773
||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||
Sbjct 46997489 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACACCAAGGTCACAGGTTCGATCCCC 46997545
>seq3991
Length=2316
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 656 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 598
>seq5
Length=178027732
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 131908726 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 131908784
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 131953715 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 131953657
>seq9721
Length=1141
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776
|||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 864 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 805
Query 136777 GGGAACAGCTTT 136788
|| ||| |||
Sbjct 804 CGGGCCAGTTTT 793
>seq14
Length=103589943
Score = 89.7 bits (98), Expect = 6e-13
Identities = 176/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 158473 GGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTT 158532
|| || ||||| | ||||| |||||||| || ||||| | || |||| || | ||
Sbjct 76501536 GGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTG 76501595
Query 158533 GGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCAT 158592
|| || | ||||| ||| ||||||| ||| | || || || || || ||| |
Sbjct 76501596 GGAGCTGATGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTT 76501655
Query 158593 GGAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAAC-G 158651
|| | || | ||||| || || ||||||||||| || |||||||| || |||| |
Sbjct 76501656 GGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGG 76501715
Query 158652 TTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGGGGTTCGGG 158711
| | || ||| || |||||| || | | | || || || || |||||||| ||
Sbjct 76501716 ATATTTTAC-CCAGAAATAGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGG 76501774
Query 158712 TGGATTTGGTTCTACTGG 158729
|| |||||||| |||||
Sbjct 76501775 AGGCTTTGGTTCCACTGG 76501792
>seq1
Length=104504130
Score = 82.4 bits (90), Expect = 9e-11
Identities = 112/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375
||| |||||| ||| || |||| ||||| || |||| |||| | || ||| ||
Sbjct 62754003 CTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 62754062
Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434
|||||||| ||| || | || || || || | ||| || |||||||||||||||||||
Sbjct 62754063 CAAGTTCTGCTGGTTGCTCTTCCGA-TTACAGGAATCTTTGTAGAGCATGTATGGGGTAC 62754121
Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468
| || || ||||| |||| | ||||| | |||
Sbjct 62754122 CTGTCTCTGTCTGAGACTCAATGATGGCATACCA 62754155
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588891489306200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |