Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq7 95.1 1e-14 seq3991 93.3 5e-14 seq5 93.3 5e-14 seq9721 89.7 6e-13 seq14 89.7 6e-13 seq1 82.4 9e-11 >seq7 Length=66841537 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/74 (89%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 38432922 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 38432863 Query 136777 GGGAACAGCTTTTA 136790 || || |||||| Sbjct 38432862 CGGGCCA-CTTTTA 38432850 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 38434559 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38434501 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 38692836 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38692894 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 38742766 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 38742824 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 39230572 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 39230630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 ||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||| Sbjct 46997489 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACACCAAGGTCACAGGTTCGATCCCC 46997545 >seq3991 Length=2316 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 656 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 598 >seq5 Length=178027732 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 131908726 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 131908784 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 131953715 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 131953657 >seq9721 Length=1141 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 |||||||| |||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 864 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 805 Query 136777 GGGAACAGCTTT 136788 || ||| ||| Sbjct 804 CGGGCCAGTTTT 793 >seq14 Length=103589943 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 158473 GGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTT 158532 || || ||||| | ||||| |||||||| || ||||| | || |||| || | || Sbjct 76501536 GGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTG 76501595 Query 158533 GGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCAT 158592 || || | ||||| ||| ||||||| ||| | || || || || || ||| | Sbjct 76501596 GGAGCTGATGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTT 76501655 Query 158593 GGAGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAAC-G 158651 || | || | ||||| || || ||||||||||| || |||||||| || |||| | Sbjct 76501656 GGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGG 76501715 Query 158652 TTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGGGGTTCGGG 158711 | | || ||| || |||||| || | | | || || || || |||||||| || Sbjct 76501716 ATATTTTAC-CCAGAAATAGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGG 76501774 Query 158712 TGGATTTGGTTCTACTGG 158729 || |||||||| ||||| Sbjct 76501775 AGGCTTTGGTTCCACTGG 76501792 >seq1 Length=104504130 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 110316 CTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACC 110375 ||| |||||| ||| || |||| ||||| || |||| |||| | || ||| || Sbjct 62754003 CTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCC 62754062 Query 110376 CAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTAC 110434 |||||||| ||| || | || || || || | ||| || ||||||||||||||||||| Sbjct 62754063 CAAGTTCTGCTGGTTGCTCTTCCGA-TTACAGGAATCTTTGTAGAGCATGTATGGGGTAC 62754121 Query 110435 CAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 | || || ||||| |||| | ||||| | ||| Sbjct 62754122 CTGTCTCTGTCTGAGACTCAATGATGGCATACCA 62754155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588891489306200