Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq24 149 1e-30
seq23 134 3e-26
seq13 131 4e-25
seq5 120 7e-22
seq8 96.9 8e-15
seq11 91.5 3e-13
>seq24
Length=78163535
Score = 149 bits (164), Expect = 1e-30
Identities = 165/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || |||||||||||||| |||||||| ||||| || | | ||| |
Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| |||||
Sbjct 22107690 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 22107749
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || || ||||| ||| || || || ||
Sbjct 22107750 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 22107809
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
| ||||| || |||| || || ||||| | ||||||||
Sbjct 22107810 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq23
Length=109465363
Score = 134 bits (148), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||||||
Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| || || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| |||||||| |||||||| ||| ||||| || || || | |||
Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTC 83252390
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || |||| || || ||||| | ||||||||
Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 83252356
>seq13
Length=89791019
Score = 131 bits (144), Expect = 4e-25
Identities = 154/207 (74%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996
||| || ||||||||||| || |||||||| || | ||||| | ||||| || |||||
Sbjct 87684749 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTG 87684690
Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056
|| || |||||||| || || || ||||| || || ||||| || |||||||| |||||
Sbjct 87684689 TTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 87684630
Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113
||||| |||||||||||||| ||| || || |||||||| | ||||| ||
Sbjct 87684629 GGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCC 87684573
Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140
|||| || || || || | |||||
Sbjct 87684572 CGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq5
Length=178027732
Score = 120 bits (132), Expect = 7e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || || |||||||| || || |||||||| | |||||| | ||||||||
Sbjct 139076906 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 139076965
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || ||||| || ||||||||||| || || ||
Sbjct 139076966 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 139077025
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||| |||||||| ||||||||
Sbjct 139077026 ATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054
Score = 118 bits (130), Expect = 2e-21
Identities = 160/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT-TCT 194981
|||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | |
Sbjct 42512303 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATAT 42512362
Query 194982 C---CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| | |||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||
Sbjct 42512363 CCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 42512422
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
||| || || || || || ||| || || || ||| | ||||| | || || ||
Sbjct 42512423 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAG 42512482
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139
|| | ||||| || |||| || | ||||| | ||||
Sbjct 42512483 AGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
>seq8
Length=55920303
Score = 96.9 bits (106), Expect = 8e-15
Identities = 133/185 (72%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||| | || ||||||||||| || |||||||| || | ||| | || | ||
Sbjct 51506768 ACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTCTCC 51506827
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||| | || |||| || || ||| ||||||| || || ||||| || ||||||||
Sbjct 51506828 AGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 51506887
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
||||| ||||| |||||| ||||||| ||| || || |||||||||| |||
Sbjct 51506888 ATTTTGGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCGACCTCAAGGGTAATGGTC 51506944
Query 195109 TTTCC 195113
|| ||
Sbjct 51506945 TTGCC 51506949
>seq11
Length=140388259
Score = 91.5 bits (100), Expect = 3e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983
||||||| ||||| |||||||||||||| || ||||| ||||| | | | || | |
Sbjct 76921587 GTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATC 76921528
Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043
|||||| || | ||| || || | ||| |||| ||| ||||| ||||||| ||||| |
Sbjct 76921527 TATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCT 76921468
Query 195044 TGTCTTGAATTTT 195056
| || ||||| ||
Sbjct 76921467 TATCCTGAATCTT 76921455
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109318423340393
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |