Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq24 149 1e-30 seq23 134 3e-26 seq13 131 4e-25 seq5 120 7e-22 seq8 96.9 8e-15 seq11 91.5 3e-13 >seq24 Length=78163535 Score = 149 bits (164), Expect = 1e-30 Identities = 165/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || |||||||||||||| |||||||| ||||| || | | ||| | Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || ||||| || || ||||| |||| ||| ||||| |||||||| ||||| Sbjct 22107690 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 22107749 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || || ||||| ||| || || || || Sbjct 22107750 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 22107809 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || |||| || || ||||| | |||||||| Sbjct 22107810 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq23 Length=109465363 Score = 134 bits (148), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| || || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| |||||||| |||||||| ||| ||||| || || || | ||| Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATGGTC 83252390 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || |||| || || ||||| | |||||||| Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTT 83252356 >seq13 Length=89791019 Score = 131 bits (144), Expect = 4e-25 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || ||||||||||| || |||||||| || | ||||| | ||||| || ||||| Sbjct 87684749 GTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCCTCCAGCTG 87684690 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || |||||||| || || || ||||| || || ||||| || |||||||| ||||| Sbjct 87684689 TTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGATTTT 87684630 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| |||||||||||||| ||| || || |||||||| | ||||| || Sbjct 87684629 GGCTTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCC 87684573 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || || || | ||||| Sbjct 87684572 CGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq5 Length=178027732 Score = 120 bits (132), Expect = 7e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || || |||||||| || || |||||||| | |||||| | |||||||| Sbjct 139076906 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 139076965 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || | || ||||| || ||||||||||| || || || Sbjct 139076966 AGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 139077025 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| |||||||| |||||||| Sbjct 139077026 ATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054 Score = 118 bits (130), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT-TCT 194981 |||||||| ||||| |||||||||||||| |||||||| ||||| || | | ||| | | Sbjct 42512303 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATAT 42512362 Query 194982 C---CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | | |||||| || ||||| || || ||||| |||| ||| ||||| |||||||| || Sbjct 42512363 CCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 42512422 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || || || || || ||| || || || ||| | ||||| | || || || Sbjct 42512423 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAG 42512482 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139 || | ||||| || |||| || | ||||| | |||| Sbjct 42512483 AGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 >seq8 Length=55920303 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||| | || ||||||||||| || |||||||| || | ||| | || | || Sbjct 51506768 ACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTCTCC 51506827 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||| | || |||| || || ||| ||||||| || || ||||| || |||||||| Sbjct 51506828 AGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 51506887 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 ||||| ||||| |||||| ||||||| ||| || || |||||||||| ||| Sbjct 51506888 ATTTTGGCTTTGACATTCTCAGTGGTGTC---ACTGGGCTCGACCTCAAGGGTAATGGTC 51506944 Query 195109 TTTCC 195113 || || Sbjct 51506945 TTGCC 51506949 >seq11 Length=140388259 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 194924 GTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCC 194983 ||||||| ||||| |||||||||||||| || ||||| ||||| | | | || | | Sbjct 76921587 GTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATC 76921528 Query 194984 CATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||||| || | ||| || || | ||| |||| ||| ||||| ||||||| ||||| | Sbjct 76921527 TATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCT 76921468 Query 195044 TGTCTTGAATTTT 195056 | || ||||| || Sbjct 76921467 TATCCTGAATCTT 76921455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109318423340393