Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq6 165 7e-35 seq1731 152 4e-31 seq491 150 1e-30 seq7 145 6e-29 seq6841 116 3e-20 seq24 116 3e-20 seq426 98.7 8e-15 seq11 96.9 3e-14 seq5 91.5 1e-12 >seq6 Length=73112236 Score = 165 bits (182), Expect = 7e-35 Identities = 362/536 (68%), Gaps = 5/536 (1%) Strand=Plus/Plus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || ||||| |||||||||||| | || ||| |||| || ||| ||||| | || Sbjct 40256062 AAGGTGGAAATAATTGCCAATGATTAGGGGAACTGAACCACCCCAAGCTATGTCACCTTT 40256121 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACC 550168 || | || || || | ||||||| ||||| | |||| | | ||||| ||| Sbjct 40256122 ACTAATACCAAATGATTGATCAGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACC 40256181 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || || |||||||||| |||| | |||||| |||| ||||||||| | | | || Sbjct 40256182 AACACAGTTTTTGATGCCAAACAACTTATTGGATGAAGATTTAATGATGCTGTTATCCAA 40256241 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAA 550288 | |||||||| |||||||| ||| |||| |||| | |||| | ||| | || || Sbjct 40256242 TCTGATATGAAACATTGGCCCTTCATGGTTGTGAATGATGCTGGCAGGCCTAAGGTTCAA 40256301 Query 550289 GCTACTCATGAAGGATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTT 550347 | || |||| | ||| | |||| | ||||| | | ||||| ||||| | Sbjct 40256302 G-TAGAATACAAGGGAGAGACAAAGAGTTTTTATCCAGAGGAGGTGTCATCCATGGTCCT 40256360 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAA 550406 | || ||||| ||| || || | |||| |||| ||||| |||| || Sbjct 40256361 GACCAAGATGAAGGAAATCGCAGAAGCCTGCCTTGG-GAAGACTGTTACCAATGCTGTTG 40256419 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | | ||||| || || |||||||||| || ||||| ||||| |||||||||||| | Sbjct 40256420 TCATAGTACCTGCTTACTTTAATGACTGTCAGCGTCAGGCTACCAAAGATGCTGGAACCA 40256479 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 ||||| | || | ||| ||| | || |||| |||||| ||||||| ||| ||| |||| Sbjct 40256480 TTGCT-GCCTCAGTGTACTTAGAATCATCAGTGAACCAACTGCTGTTGCTACTGCCTATG 40256538 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGGT 550582 | | || ||| | || ||| ||||| || |||||||||| || ||| Sbjct 40256539 GCTTAGACAAAAAGGTTGGAGCAGAGAGAAATGTGCTGATCTTTGATTTGGGTGGT 40256594 >seq1731 Length=14715 Score = 152 bits (168), Expect = 4e-31 Identities = 338/495 (68%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTC-GCGAAATGTTAAG 552172 || ||| | || |||||||||||| ||| |||||||| || || | | | | | ||| Sbjct 4150 CACGAAGTCGTACTTGTTGGTGGAAGTACCAGAATTCCAAAGATCCAGACACTTATCAAG 4209 Query 552173 TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTG--TTAATCCAGATGAGGCTGTTGCC 552230 ||| ||| ||||| ||| || | || | | |||| |||||||| |||||||| Sbjct 4210 AACTTCTTT-AATGGAAAAGAACCA--TGCAGATCAATTAACCCAGATGAAGCTGTTGCA 4266 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGAT--GAAAAACTACAAA 552288 ||||| || || | ||||| || ||| | ||||| ||| || ||||| | ||| Sbjct 4267 TATGGAGCAGCTGTACAAGCTGCCATTTTATCTGGC--AACCAATCAGAAAAGATTCAAG 4324 Query 552289 ATATTGTACTTGTAG-ATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATT 552347 | ||| ||||| | |||| |||| | || ||||| ||||| |||| ||| ||| || Sbjct 4325 AG-TTGCTCTTGTTGGATGTCGCTCCATTGTCACTTGGATTAGAGACAGCTGGTGGTGTT 4383 Query 552348 ATGACTAATCTT-ATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTC 552406 ||||| | | || || | |||||||| || || || || ||| | | ||| | Sbjct 4384 ATGAC-AGTGTTGATTAAAAGAAATACAACAATACCAACCAAGAAAAACCAAATCTTTAC 4442 Query 552407 TACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATT 552466 || | |||| ||| | ||| |||||| | ||||||||||||||| | | Sbjct 4443 AACAAACGAAGATCGCCAAGAAGGTGTGTTGATTCAAGTATTTGAAGGAGAAAGAGCAAT 4502 Query 552467 CACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCG 552526 || |||||||| || | ||| || | || | || || || | || || || | Sbjct 4503 GACAAAAGATAACAACCTACTAGGAAAGTTCCACTTGAGTGGAATAGCACCAGCACCAAG 4562 Query 552527 TGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGAC 552586 |||||||| ||||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 4563 AGGAGTACCACAAATCGAGGTTACATTTGATATTGATGCAAATGGTATCTTGAACGTCAC 4622 Query 552587 TGCTTGTGATAAATC 552601 |||| |||||||| Sbjct 4623 TGCTATGGATAAATC 4637 Score = 132 bits (146), Expect = 4e-25 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || || || || || || ||||||| || | || || || Sbjct 6202 AGCTATTGGAATTGACTTGGGTACAACCTACTCATGTGTTGCAGTATACAAAGATAACAA 6261 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||||||| |||||||||||||||||||||| || || ||||||||| | ||||| Sbjct 6262 CGTCGAAATTATTCCCAATGATCAAGGTAACAGAACAACACCTTCTTATGTTGCATTCAC 6321 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || ||| || |||||||||| || || |||| | | |||| || || Sbjct 6322 TGATACCGAAAGGTTGATTGGTGATGCCGCTAAGAATCAGGAAGCCCGTAACCCAGAAAA 6381 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||| || || ||| | | |||||||| | || |||| |||||||| | Sbjct 6382 CACAATTTTCGACGCCAAAAGACTTATTGGAAGGAAGTTCGATGACAGAACTGTTCAAGA 6441 Query 550231 AGATATGAAGCATTGGCCTTT 550251 ||||||||| |||||||| || Sbjct 6442 AGATATGAAACATTGGCCATT 6462 >seq491 Length=27848 Score = 150 bits (166), Expect = 1e-30 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || || || || ||||| ||||||| || | || | || Sbjct 26976 AGCTATTGGAATTGACTTGGGTACAACATACTCATGTGTTGCAGTATACAAAGACAACAA 26917 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||||||| |||||||||||||||||||||| || || ||||||||| | || || Sbjct 26916 CGTCGAAATTATTCCCAATGATCAAGGTAACAGAACAACACCTTCTTATGTTGCATTTAC 26857 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || || ||| ||| ||||||||||||| ||| | || | | |||| || || Sbjct 26856 TGATACCGAAAGATTAATTGGTGATGCAGCTAAAAACCAGGAAGCACGTAACCCAGAAAA 26797 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || ||||||||||| ||| | | |||||||| | || |||| |||||||||| Sbjct 26796 CACAATTTTTGATGCCAAAAGACTTATTGGAAGGAAATTCGATGACAGAACTGTTCAGGA 26737 Query 550231 AGATATGAAGCATTGGCCTTT 550251 ||||||||| |||||||| || Sbjct 26736 AGATATGAAACATTGGCCATT 26716 >seq7 Length=66841537 Score = 145 bits (160), Expect = 6e-29 Identities = 338/500 (68%), Gaps = 16/500 (3%) Strand=Plus/Plus Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || || || || || || ||||| || || || ||| | || || || ||||| | Sbjct 34836724 GGCAAGGTGGAGATCATCGCCAACGACCAGGGCAACCGCACCACCCCCAGCTATGTGGCC 34836783 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAAT 550162 ||||| || || || | | | || ||||| || || |||| ||||| || ||| Sbjct 34836784 TTCACAGACACCGAGCGGCTCATCGGCGATGCGGCCAAGAATCAGGTAGCCA-TG--AAT 34836840 Query 550163 CCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACT 550222 || || ||| | |||||||| |||||| | || || |||| ||||||||| | Sbjct 34836841 CCCCAGAACACTGTGTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTC 34836900 Query 550223 GTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA- 550281 || || |||||||||| | ||||||||||||| | | || | || || || | Sbjct 34836901 GTGCAATCAGATATGAAACTTTGGCCTTTCCAAGTAATCAACGAAGGAGGCAAGCCCAAG 34836960 Query 550282 -TATTGAAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATC 550338 || || | |||| | | ||| | ||| |||| || || |||| || || Sbjct 34836961 GTAATGGTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTC 34837016 Query 550339 TATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGG 550397 |||||| | | || ||||| | || || |||||| |||| | | | || || Sbjct 34837017 TATGGTACTGACTAAGATGAAGGAGACTGCTGAGGCTTTT-TTGGGCTACACTGTCACCA 34837075 Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || ||||| ||||| || || |||||||| || ||||| || || || |||| Sbjct 34837076 ATGCTGTGATCACTGTGCCAGCTTACTTCAATGACTCTCAGCGTCAGGCCACCAAGGATG 34837135 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| || || || ||||| || | |||||||||||||| ||||||||||| Sbjct 34837136 CAGGTGTTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCA 34837195 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 34837196 TTGCCTATGGCTTAGATAAA 34837215 >seq6841 Length=1464 Score = 116 bits (128), Expect = 3e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 550373 GCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGAC 550432 |||| | | ||| | || |||| | ||| | || || || ||||||||||||||||| Sbjct 809 GCTTATCTGGGTAAGGAGGTTAAAAAGGCAATTATTACAGTTCCAGCATATTTTAATGAT 750 Query 550433 TCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATT 550492 || || ||||| ||||||| |||||||| || ||||| ||| ||||| || | ||| Sbjct 749 TCCCAGCGTCAGTCTACTAAGGATGCTGGTACCATCGCTGGTCTTGATGTTATTAGAATT 690 Query 550493 ATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| ||||| || || || || |||||||||| ||||||| Sbjct 689 ATCAACGAACCAACAGCAGCAGCTATTGCATATGGTATTGATAA 646 Score = 89.7 bits (98), Expect = 4e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 361701 CAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTC 361760 ||| |||||| || | | || |||||||||||||| || ||| ||||||||| || | Sbjct 650 CAATACCATATGCAATAGCTGCTGCTGTTGGTTCGTTGATAATTCTAATAACATCAAGAC 709 Query 361761 CCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAA 361820 | || || | ||||| ||| | ||||| || | ||||||||||||||| |||| Sbjct 710 CAGCGATGGTACCAGCATCCTTAGTAGACTGACGCTGGGAATCATTAAAATATGCTGGAA 769 Query 361821 CAGTAATCACTGCTTTTTCAAC 361842 | ||||| | ||| |||| ||| Sbjct 770 CTGTAATAATTGCCTTTTTAAC 791 >seq24 Length=78163535 Score = 116 bits (128), Expect = 3e-20 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 22107639 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACATCCATCTT 22107696 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 22107697 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 22107756 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAGAGTAACAGT 563441 | || || ||||| || |||||||| || || | || |||||||| | || Sbjct 22107757 GGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCG-AC-CTCGAGAGTGATGGT 22107814 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || || || || || |||||||||||||| Sbjct 22107815 CTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847 >seq426 Length=37308 Score = 98.7 bits (108), Expect = 8e-15 Identities = 174/253 (69%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 368795 TTTTGGATTGCTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATACATTATCCATTTG 368854 |||| ||||| |||| |||| || |||||||||| | | ||||| || ||||||| Sbjct 18500 TTTTTGATTGTTGGTATGAAAGTGGATCTATGCCTTTAGCAAAGATACACTACCCATTTG 18441 Query 368855 ATAACGCAAAATACTTTGATAAT---GATAAAGATTATGTGGCTGATTTTGTAACAGAAT 368911 | ||||| |||||| ||||| || | ||| ||||| || | ||| Sbjct 18440 A-------AAATAAG--GATAATTTAGATAAGTTTTTTCCGGCAAATTTTATAGCTGAAG 18390 Query 368912 CAATTGATCAAACACGTGGTTGGTTTTATACCCTATTAGTATTATCCACAGCTATTTTCG 368971 | ||||| ||| | |||||||||||||| | |||| | || ||| | | || | Sbjct 18389 GGTTAGATCAGACAAGGGGTTGGTTTTATACATTGACAGTAATTTCTACACATTTATTTG 18330 Query 368972 ATAAACCGGCTTTTAAAAATGTAATAGTAACTGGTATTGTTAATGCATCTGATGGTCAAA 369031 |||| ||||||||||||| || || | ||| |||| ||| ||||||| ||| Sbjct 18329 GTAAAGTACCTTTTAAAAATGTTATTGTTAATGGACTTGTGTTGGCAGCTGATGGGAAAA 18270 Query 369032 AGATGTCAAAAAG 369044 ||||||||||||| Sbjct 18269 AGATGTCAAAAAG 18257 >seq11 Length=140388259 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 15221242 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 15221301 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 15221302 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 15221354 >seq5 Length=178027732 Score = 91.5 bits (100), Expect = 1e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT----CTTGAA 563319 ||||||||||| || ||| |||| ||| ||||| |||| | ||| | | | Sbjct 42512312 ACAAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTATATCCATCTA 42512369 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||| Sbjct 42512370 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 42512429 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACA 563439 || || || || ||||| || || |||| | | | | |||||||| | Sbjct 42512430 TCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGATG 42512489 Query 563440 GTTTTACCAGTAAGAGTTTTAACGAAAATTTGCA 563473 || || || || || || | |||||||| |||| Sbjct 42512490 GTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028688938709710