Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq18 96.9 3e-15
seq9 87.8 1e-12
>seq18
Length=152661129
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 112099 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 112158
|| || || || || ||||| |||| || || ||||| | | ||||| |||||| ||
Sbjct 15388717 TCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCT 15388658
Query 112159 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 112218
|| ||||||||||| ||||| |||||||| ||||||| ||||| || ||| ||||||
Sbjct 15388657 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAA 15388598
Query 112219 GAC 112221
|||
Sbjct 15388597 GAC 15388595
>seq9
Length=141945777
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 104084240 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 104084299
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 104084300 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 104084347
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408560434270067
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |