Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq14 104 6e-18 >seq14 Length=103589943 Score = 104 bits (114), Expect = 6e-18 Identities = 190/274 (69%), Gaps = 12/274 (4%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | ||| || ||||| ||| | |||||| | || || || || || || | | Sbjct 76501528 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 76501587 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | |||||||| |||| ||| || ||| ||| | ||| || || ||||||||||| | | Sbjct 76501588 TAGATGTGGGAGCTGATGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 76501647 Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137 |||||||| || | || ||| | | || |||||| | ||||| ||| | |||| Sbjct 76501648 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 76501707 Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191 ||| || || | |||| | ||| |||||| ||| ||| ||||| || | | Sbjct 76501708 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACACTG 76501761 Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225 |||||||||| | ||| ||||| || || ||||| Sbjct 76501762 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 76501795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138662695877724