Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq14 104 6e-18
>seq14
Length=103589943
Score = 104 bits (114), Expect = 6e-18
Identities = 190/274 (69%), Gaps = 12/274 (4%)
Strand=Plus/Plus
Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017
|||| | ||| || ||||| ||| | |||||| | || || || || || || | |
Sbjct 76501528 TTCCTTCTGGGTGCTATGGAAGAGTGGCTCCTCGTTCTGGCTTGGCAGCAAAACACTTCA 76501587
Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077
| |||||||| |||| ||| || ||| ||| | ||| || || ||||||||||| | |
Sbjct 76501588 TAGATGTGGGAGCTGATGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTCCTGT 76501647
Query 1078 TTAATTTTAGCGATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAATTT 1137
|||||||| || | || ||| | | || |||||| | ||||| ||| | ||||
Sbjct 76501648 TTAATTTTGGCAAAGAGAAGTTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTCATTT 76501707
Query 1138 GTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGA--TTC----CTTAGAGGATTCGG 1191
||| || || | |||| | ||| |||||| ||| ||| ||||| || | |
Sbjct 76501708 GTG-AACGGATATTTT---ACCCA--GAAATAGAGGAAGTTCAAGTTTTAGATGACACTG 76501761
Query 1192 AAAGGGGTTCTGCAGGATTTGGGTCTACCGGAAG 1225
|||||||||| | ||| ||||| || || |||||
Sbjct 76501762 AAAGGGGTTCAGGAGGCTTTGGTTCCACTGGAAG 76501795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138662695877724
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |