Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq9 172 1e-37
seq20 98.7 2e-15
seq1 95.1 2e-14
>seq9
Length=141945777
Score = 172 bits (190), Expect = 1e-37
Identities = 184/243 (76%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444
||| | || ||||| | || | ||| || ||||| ||||||||| |||||||||||
Sbjct 15036898 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 15036957
Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504
||||| || | | || || ||||||| || ||||| || | |||||| ||||||
Sbjct 15036958 TCCCGGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGTTCTCCGCCTTGAGTGTCTTCACC 15037017
Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564
|| |||||||| ||||||||||| ||||| || ||| ||||| |||||||| ||||
Sbjct 15037018 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 15037077
Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624
||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| ||
Sbjct 15037078 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 15037137
Query 241625 GAC 241627
|||
Sbjct 15037138 GAC 15037140
Score = 132 bits (146), Expect = 9e-26
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
||||||| ||| ||||| || |||||||| || ||||| | | ||| || | |||
Sbjct 6402434 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 6402375
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | ||||||| ||||||||||||||| || |||| |||||| |||||
Sbjct 6402374 TCCGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 6402315
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|||||| |||||| |||| ||| || | |||||| || || | ||| || || |||||
Sbjct 6402314 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGACGCTTGCGCTCTGCCTTA 6402255
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
|| || || || ||||||||||| || |||
Sbjct 6402254 ATTCGCTCTTGCGTGTCCATGTCGATAGGCGAC 6402222
Score = 84.2 bits (92), Expect = 4e-11
Identities = 87/115 (76%), Gaps = 8/115 (7%)
Strand=Plus/Plus
Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985
|||||||||| ||||||||| | ||||| || | | || || ||||||| |||||||
Sbjct 15036935 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGCTGGACAGCCCCGCGT 15036994
Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032
| || | |||||| | || |||||||| ||||||||||| ||||||||
Sbjct 15036995 TCTCCGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 15037049
>seq20
Length=149338601
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558
|||||||| ||||||||||||||||| | ||||| || | ||||| |||| |||
Sbjct 107172342 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 107172283
Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618
|| | |||||||| | | ||| | ||||||||||| || |||||| ||||||||||
Sbjct 107172282 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCG 107172223
Query 241619 ATCGGAGAC 241627
|| || |||
Sbjct 107172222 ATGGGGGAC 107172214
>seq1
Length=104504130
Score = 95.1 bits (104), Expect = 2e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||||| || || |||||||||||||||||| |||||| |||| |||||| |||
Sbjct 62754016 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 62754075
Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| || || | || ||||| |||||||||||||| |||| || |||||| |||
Sbjct 62754076 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 62754134
Query 213647 GGAC 213650
|||
Sbjct 62754135 AGAC 62754138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931399136687360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |