Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq4 367 1e-96
seq31 161 1e-34
seq28 98.7 1e-15
seq12 95.1 1e-14
>seq4
Length=81198604
Score = 367 bits (406), Expect = 1e-96
Identities = 675/984 (69%), Gaps = 9/984 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || ||
Sbjct 66967938 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGGGTCGAAATTGTTGGC 66967997
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| |||||| || | | ||||||| || ||| || | ||||| ||||| ||
Sbjct 66967998 AAACAAATGGTGCACGCGC---AACATCCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 66968054
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
||| || | ||| |||||| ||| |||||||| | || || || | ||||| |||||
Sbjct 66968055 GGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 66968114
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
|||||||||| || ||||||||||| |||||||||||||| || |||||||| || |
Sbjct 66968115 AAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAGACGTGTCGTACTTATG 66968174
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
| | || | | || || || |||| || | ||| | |||||||| || | ||
Sbjct 66968175 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATAATC 66968234
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | ||
Sbjct 66968235 GTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 66968294
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || | || ||||| || || || || || || | ||| |
Sbjct 66968295 CACATACTCCACCTATTCCCTACTGACCACAAAATAGGCACTTCCCGAAAACAGAGGTGT 66968354
Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| || ||| ||| ||| || ||||| | || | ||| ||||| |
Sbjct 66968355 TTCAAGAGGTGGA-TGTATTTTGTCAGTTCCCGTGTTGGTCAGCTTTCCATTCACGACTT 66968413
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| | |||| |||||||| | | || || | |||||| | ||||| ||||| |||
Sbjct 66968414 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGT 66968473
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| |||| | | | || |||| | |||| || || ||||| || || | ||||| |
Sbjct 66968474 TCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 66968533
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCT 160708
| | ||||| | ||||||| ||||||||| | || ||| || || || ||||
Sbjct 66968534 CCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA--TCCTGGAGAGGTCCTG 66968591
Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768
|||||| |||| || ||||| || |||||||||||||| ||||| ||| |||| || |
Sbjct 66968592 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGAAGCATACACCACGCTCTCCAGCTG 66968651
Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828
|||||| |||||||| ||| ||| || || | || ||||| | | || |||
Sbjct 66968652 ACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCACAGCTGTAGCCAAAAACGA 66968711
Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888
| || | ||| |||||| || | ||||| | ||||||||| ||||||||||||
Sbjct 66968712 TTCCTCTGATTTTGTGTCCACCTGAATACAATAGAAATTCTGAGGCATGTAGATGGCCCT 66968771
Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948
|| | ||| || | ||| || || || ||||| | ||| ||||| || ||||| |||||
Sbjct 66968772 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAA 66968831
Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008
||| ||| || ||| || | | | | || || ||| ||||||| ||| || |
Sbjct 66968832 CTCCACCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAAGC 66968891
Query 161009 ACAATCCCGCGTCATGTTGATATA 161032
|||||| | |||||||| || ||
Sbjct 66968892 ACAATCACCAGTCATGTTTATGTA 66968915
>seq31
Length=75455120
Score = 161 bits (178), Expect = 1e-34
Identities = 215/296 (73%), Gaps = 6/296 (2%)
Strand=Plus/Minus
Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212
||||| | ||| | | |||| || ||||| || || || || || || ||||||||| ||
Sbjct 73576416 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 73576357
Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272
| || | || ||||||| |||||||||||| || || | |||||||| ||| |||
Sbjct 73576356 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 73576297
Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332
| ||| || ||||| | || || || | ||| || |||||||| || |||||||||
Sbjct 73576296 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 73576237
Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392
||| ||||| |||||| || ||||| ||||| | || ||||| || || |||| |
Sbjct 73576236 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGACTTTTTGCCATGTCACAATCAAA 73576177
Query 168393 ACCTCTT---TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445
|| |||| || || ||||| | ||||| | ||||| || |||||||||||
Sbjct 73576176 ACTTCTTGGGGAT--GT-TGCAGAAAGCATCTTAAAGAAGCAGGTGTGTTCAGCAG 73576124
Score = 102 bits (112), Expect = 9e-17
Identities = 157/221 (71%), Gaps = 5/221 (2%)
Strand=Plus/Minus
Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941
|||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || ||
Sbjct 73578982 GTTTCCCTGTA-GTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 73578927
Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001
|| || || ||||| || ||||| | || | |||| || ||| || ||||| ||
Sbjct 73578926 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGGTGCTGGTGACAGACGTTGTTCCGTT 73578867
Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061
| | ||| | ||| | | || ||||||||||||||||| || | ||||||||| | ||
Sbjct 73578866 GGGGTGTGAGACGATCTCAGTACTGTTCTCAATCCCTGACCCAGAGACCTTCCAGGAGAT 73578807
Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
| ||| || || || || | || ||||| || || ||||
Sbjct 73578806 CATAGGGGCTGGGCGAGCATTGGCCGAGCAAGTGATGTTTA 73578766
>seq28
Length=82073021
Score = 98.7 bits (108), Expect = 1e-15
Identities = 168/244 (69%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241
|||| | |||||| | ||| | | | |||||| | |||| | | ||||| ||
Sbjct 69578930 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 69578989
Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301
|||| |||| || |||| |||||| | ||||| || |||| | || |||||| || |
Sbjct 69578990 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 69579049
Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361
| ||||| |||| || || || || ||||| | || || | | || | || |
Sbjct 69579050 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 69579109
Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421
||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || |
Sbjct 69579110 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 69579169
Query 176422 TACA 176425
| ||
Sbjct 69579170 TGCA 69579173
>seq12
Length=127780087
Score = 95.1 bits (104), Expect = 1e-14
Identities = 194/288 (67%), Gaps = 3/288 (1%)
Strand=Plus/Minus
Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156
||| || || ||||| || || || || |||||| || |||||||||| ||| ||||
Sbjct 67982918 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAGGTCCCCGGC 67982862
Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216
||| | | ||| | || || || | || |||||| | || | || || |
Sbjct 67982861 CCCATAAATGCAAATGGCCCGCTGATGGATTCCAGAGCAAGGTGCATAAGGTGCCCCCAT 67982802
Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276
|| || || |||| || ||||||||| || | |||||| || || |||||| ||
Sbjct 67982801 GCTGACATCTCCCTCGTGGTCCTGCCACTTGACCAGCCTGGCGATGGCAGTCATGTCTGA 67982742
Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
| ||| || ||| |||||| | || || | | || |||||| |||||
Sbjct 67982741 GATGTGATACTTGGGGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 67982682
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384
|||||| |||||||| || ||||| || ||||| || | |||||| ||
Sbjct 67982681 GGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTGGCCCATTCAAT 67982634
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577136376260040
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