Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4 367 1e-96 seq31 161 1e-34 seq28 98.7 1e-15 seq12 95.1 1e-14 >seq4 Length=81198604 Score = 367 bits (406), Expect = 1e-96 Identities = 675/984 (69%), Gaps = 9/984 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| |||||| || || || Sbjct 66967938 CAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCGGGTCGAAATTGTTGGC 66967997 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| |||||| || | | ||||||| || ||| || | ||||| ||||| || Sbjct 66967998 AAACAAATGGTGCACGCGC---AACATCCAGTTCAAGTCACCAGCTCCGAAAACGCACAC 66968054 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| |||||| ||| |||||||| | || || || | ||||| ||||| Sbjct 66968055 GGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCTTGGAAACGTCTCCTTC 66968114 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||||||||| || ||||||||||| |||||||||||||| || |||||||| || | Sbjct 66968115 AAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAGACGTGTCGTACTTATG 66968174 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | | || || || |||| || | ||| | |||||||| || | || Sbjct 66968175 GCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAGTGGCCCAGAGATAATC 66968234 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 ||| |||||||| ||||| || | ||| ||||| |||| | ||| || | | || Sbjct 66968235 GTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGATATTTTGGTTCTGGAG 66968294 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || ||||| || || || || || || | ||| | Sbjct 66968295 CACATACTCCACCTATTCCCTACTGACCACAAAATAGGCACTTCCCGAAAACAGAGGTGT 66968354 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | ||| ||||| | Sbjct 66968355 TTCAAGAGGTGGA-TGTATTTTGTCAGTTCCCGTGTTGGTCAGCTTTCCATTCACGACTT 66968413 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | | |||| |||||||| | | || || | |||||| | ||||| ||||| ||| Sbjct 66968414 CATAATGCTTTTTCCACCTTTCTTTTTTATGGGATGGCATTCTCTCCGTTTCTAGGTTGT 66968473 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | |||| | | | || |||| | |||| || || ||||| || || | ||||| | Sbjct 66968474 TCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 66968533 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG--GTCCCT 160708 | | ||||| | ||||||| ||||||||| | || ||| || || || |||| Sbjct 66968534 CCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA--TCCTGGAGAGGTCCTG 66968591 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || |||||||||||||| ||||| ||| |||| || | Sbjct 66968592 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGAAGCATACACCACGCTCTCCAGCTG 66968651 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 |||||| |||||||| ||| ||| || || | || ||||| | | || ||| Sbjct 66968652 ACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCACAGCTGTAGCCAAAAACGA 66968711 Query 160829 CTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCT 160888 | || | ||| |||||| || | ||||| | ||||||||| |||||||||||| Sbjct 66968712 TTCCTCTGATTTTGTGTCCACCTGAATACAATAGAAATTCTGAGGCATGTAGATGGCCCT 66968771 Query 160889 GAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAA 160948 || | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||||| Sbjct 66968772 CAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAA 66968831 Query 160949 CTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATC 161008 ||| ||| || ||| || | | | | || || ||| ||||||| ||| || | Sbjct 66968832 CTCCACCTCTTCTTTACTAAGTGGTTCTATAATATATTTGCGCTTCTTGATGAAAGAAGC 66968891 Query 161009 ACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| || || Sbjct 66968892 ACAATCACCAGTCATGTTTATGTA 66968915 >seq31 Length=75455120 Score = 161 bits (178), Expect = 1e-34 Identities = 215/296 (73%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 168153 AGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATG 168212 ||||| | ||| | | |||| || ||||| || || || || || || ||||||||| || Sbjct 73576416 AGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGCACTTG 73576357 Query 168213 AAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCC 168272 | || | || ||||||| |||||||||||| || || | |||||||| ||| ||| Sbjct 73576356 TAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGAGTCCC 73576297 Query 168273 AACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCG 168332 | ||| || ||||| | || || || | ||| || |||||||| || ||||||||| Sbjct 73576296 AGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGTTCTCG 73576237 Query 168333 CTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGA 168392 ||| ||||| |||||| || ||||| ||||| | || ||||| || || |||| | Sbjct 73576236 CTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGACTTTTTGCCATGTCACAATCAAA 73576177 Query 168393 ACCTCTT---TATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAG 168445 || |||| || || ||||| | ||||| | ||||| || ||||||||||| Sbjct 73576176 ACTTCTTGGGGAT--GT-TGCAGAAAGCATCTTAAAGAAGCAGGTGTGTTCAGCAG 73576124 Score = 102 bits (112), Expect = 9e-17 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 167883 GTTTGCC-GTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTT 167941 |||| || ||| ||| || ||||| |||| ||||| |||| ||| ||||| || || Sbjct 73578982 GTTTCCCTGTA-GTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCC---TT 73578927 Query 167942 TCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATT 168001 || || || ||||| || ||||| | || | |||| || ||| || ||||| || Sbjct 73578926 CCCCACCTGTCTCTTGGGGTCTTTGATCTGGAGGGTGCTGGTGACAGACGTTGTTCCGTT 73578867 Query 168002 GCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATAT 168061 | | ||| | ||| | | || ||||||||||||||||| || | ||||||||| | || Sbjct 73578866 GGGGTGTGAGACGATCTCAGTACTGTTCTCAATCCCTGACCCAGAGACCTTCCAGGAGAT 73578807 Query 168062 TACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | ||| || || || || | || ||||| || || |||| Sbjct 73578806 CATAGGGGCTGGGCGAGCATTGGCCGAGCAAGTGATGTTTA 73578766 >seq28 Length=82073021 Score = 98.7 bits (108), Expect = 1e-15 Identities = 168/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 176182 TCCATTGAAAGTATGTGTTGTAGATTGTGTTGTTTGTATCTAGTATATGTAGATATTTTA 176241 |||| | |||||| | ||| | | | |||||| | |||| | | ||||| || Sbjct 69578930 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCTACTTCCTTCAGATACTTAG 69578989 Query 176242 CTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGAATGTAGT 176301 |||| |||| || |||| |||||| | ||||| || |||| | || |||||| || | Sbjct 69578990 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 69579049 Query 176302 TTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAATAATGAGC 176361 | ||||| |||| || || || || ||||| | || || | | || | || | Sbjct 69579050 TCTCATAGTTTTCCCTAGATGGCCCCAAAACAACAGGCACAGAGCCAGCCAGAAAAGCAT 69579109 Query 176362 GGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAATAGAACT 176421 ||||| |||||||| |||||| || |||| |||||||||||||| | | ||| || | Sbjct 69579110 TGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAGGAAAGATAAAATT 69579169 Query 176422 TACA 176425 | || Sbjct 69579170 TGCA 69579173 >seq12 Length=127780087 Score = 95.1 bits (104), Expect = 1e-14 Identities = 194/288 (67%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || ||||| || || || || |||||| || |||||||||| ||| |||| Sbjct 67982918 GTCAAACTTGTTTGCCAAGAGGTGATG---GTTCTGGAGAATCCAGTGCAGGTCCCCGGC 67982862 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||| | || || || | || |||||| | || | || || | Sbjct 67982861 CCCATAAATGCAAATGGCCCGCTGATGGATTCCAGAGCAAGGTGCATAAGGTGCCCCCAT 67982802 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 || || || |||| || ||||||||| || | |||||| || || |||||| || Sbjct 67982801 GCTGACATCTCCCTCGTGGTCCTGCCACTTGACCAGCCTGGCGATGGCAGTCATGTCTGA 67982742 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 | ||| || ||| |||||| | || || | | || |||||| ||||| Sbjct 67982741 GATGTGATACTTGGGGTGGTAGGGAACAGAGCCAGGCATCCATGGTGCACGCTGAAGGGT 67982682 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||| |||||||| || ||||| || ||||| || | |||||| || Sbjct 67982681 GGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTGGCCCATTCAAT 67982634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577136376260040