Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq24 116 7e-21
seq31 89.7 1e-12
>seq24
Length=78163535
Score = 116 bits (128), Expect = 7e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||
Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAG 22107678
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | | |||| |||| ||| || ||||||||||| | ||| || || ||||| |
Sbjct 22107679 ACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAG 22107738
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 22107739 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGA 22107798
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
| || ||||| ||||| || || || | || || | || || |||||||
Sbjct 22107799 CCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq31
Length=75455120
Score = 89.7 bits (98), Expect = 1e-12
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 192381 ATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTT 192440
||| |||| ||| || ||||||||||| | ||| || || ||||| || | |||||| ||
Sbjct 60055213 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTT 60055272
Query 192441 ATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAAT 192500
||| || || || |||||||| ||| | ||| || | ||||| || ||||| ||
Sbjct 60055273 ATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGAT 60055332
Query 192501 GGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
||| || | || | || || || || |||||||| ||
Sbjct 60055333 GGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 60055371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984335207911650
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |