Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10857 84.2 4e-11 >seq10857 Length=932 Score = 84.2 bits (92), Expect = 4e-11 Identities = 177/245 (72%), Gaps = 23/245 (9%) Strand=Plus/Minus Query 161383 aataaattaatattattaccatatacattaataaaaaatattaattttaatagtttaata 161442 |||| ||||| ||||| ||||| | ||||||||| ||| ||| | ||| | |||| Sbjct 511 AATATATTAAA--TATTATAATATATAATAATAAAAA-TAT-AATGCTTATATATAAATA 456 Query 161443 tatataattagcatacata-atata-atcttattattaataaattttgtattaga--taa 161498 |||||| || ||| ||| ||||| | | |||| ||||| || | ||||||| ||| Sbjct 455 TATATAGGTAT-ATATATACATATATAACATATTTATAATATATACTTTATTAGAATTAA 397 Query 161499 aaattata-ataatat-tgatatatataatacatatttagatttta---ataaaat-gaa 161552 | || ||| ||||||| ||| |||||||||||||| ||| ||| || |||| || ||| Sbjct 396 ATATCATATATAATATATGA-ATATATAATACATAATTATATTCTATATATAATATAGAA 338 Query 161553 taatatttatag----attattaaCTAA-AGACGA-AGATT-TATTATATAAATGTTTTA 161605 ||||| | || | |||| | ||| | | | ||| ||||||||||||| | || Sbjct 337 TAATACATGTAACAATAATATTTAATAATATATTTTATATTATATTATATAAATGATATA 278 Query 161606 CTTAT 161610 |||| Sbjct 277 TTTAT 273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905006124298200