Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10755 107 6e-18 seq5 89.7 2e-12 >seq10755 Length=952 Score = 107 bits (118), Expect = 6e-18 Identities = 207/303 (68%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 289042 ATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTT 289101 ||||| ||||| || || | | | || | |||| ||| || || |||| || || | | Sbjct 952 ATTTCATCAATAAATATTATAGAAGGTGCATTTCTTCTTGCTTTTTCAAACAAATCACGT 893 Query 289102 ACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATG 289161 || | |||| |||| ||| ||| | | || | ||| ||| | || | | || | Sbjct 892 ACTCTTGATGGCCCAATACCTACAAATACCTCAATAAAATCACTTCCTGACA-TAGAGTA 834 Query 289162 AA-TGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGG 289220 || || ||| || ||||| || ||||||||| | |||| |||||||| ||||||||||| Sbjct 833 AAATGGTACGTTGGCTTCTCCAGCTACTGCCTTTGCCAATAGTGTCTTTCCTGTTCCAGG 774 Query 289221 TGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGG 289280 | || |||| | ||||| ||||||| || || ||| |||| |||| | | || Sbjct 773 AGCACCTACTAACAACACTCCTTTTGGTATCTTAGCTCCATATGACTCATATGTTTTTGG 714 Query 289281 GCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTAC 289340 || ||||||| || |||| || || |||| ||| || |||| ||| || || Sbjct 713 ACTTCTTAAAAAATCAACAAACTCTGTAATTTCAATTTTAGCTTCATTCATTCCAGCAAC 654 Query 289341 ATC 289343 ||| Sbjct 653 ATC 651 >seq5 Length=178027732 Score = 89.7 bits (98), Expect = 2e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| || || || || |||| || ||||| ||||| Sbjct 131177165 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCGATCAGCCCCTCACGGCCCCCCATGGCATG 131177106 Query 302667 GAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCG 302725 |||||| | ||| || ||| || || | | ||||| |||| || || || || Sbjct 131177105 GAAGAAGAACTCGGTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACAAAGCCTCGGC 131177047 Query 302726 CCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATG 302785 ||| ||| || ||| ||| | ||||| |||||||||| || || | || ||| Sbjct 131177046 TCTCAGGCCCATAGTCATCTTTGATGAAGTGAGGCAGGGTCCGGTGCTTGAATCCAAATG 131176987 Query 302786 GGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 |||| ||||| || || ||||||||||| || Sbjct 131176986 GGATCCGCTTGCCCTCCACGTTCTGCTGCCC 131176956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471601132886423